Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310497

Identifier: 18310497

GI number: 18310497

Start: 1772948

End: 1773445

Strand: Reverse

Name: 18310497

Synonym: CPE1515

Alternate gene names: NA

Gene position: 1773445-1772948 (Counterclockwise)

Preceding gene: 18310498

Following gene: 18310496

Centisome position: 58.5

GC content: 31.93

Gene sequence:

>498_bases
ATGAAAAAGTTTTTAATAAGTGTTTTAGCTGCAGCTATGATAGGGGCTACATTAACCTCTTGTGGAGCTAAGGATAATAA
TGGAACAAAGGTTGAACAAAGTGATATAAAAATGTCTATGAGTGCTTCAGATATGACAAATAAACTTGTAGATGCAGGTA
TGGTTACAATGCCTGTGCCTTTAGATGATGAAATAGCTAAGGAAATTTATCATTTAAATTTAAGTGATATAGAGGAATAT
GGGATTTCTGAGACTGGTATATCACCGGGAAATTCATTAATTATTATTGCAAAAGCTAAGGAAGGAAAAGTAGAGTCAGT
AAAAGCATCTTTAGATAAAGTTCTAGAAGATAAGATTGGAAAAGCTTTTTATCCAGAGGAAAAAGAGATTGCAGAGTCTT
CAGAAGTTAAGGTTAAAGGGAATTATGTTTCACTATTTATATTACCAGAGGATCAATTAGAAGAAGCAAATAAGATATAC
GAAGGGGAATTCAAATAA

Upstream 100 bases:

>100_bases
AAAGGATTAACAATATTCTAAAATTATTGGAGGGGATTAGGTTATAGGATATAATAACGTTAACATAATAAATTATGTAT
TTTAGGGAGTGAATATAGGG

Downstream 100 bases:

>100_bases
AGGTTAATTCCTACTTAAATAAATTAATAGTTTGACTTTTAAACTTGCTATGCTTAGGGAAAGGAGAAATTTTTATATTT
TTCTGTAAGTATTAGCAAGT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKKFLISVLAAAMIGATLTSCGAKDNNGTKVEQSDIKMSMSASDMTNKLVDAGMVTMPVPLDDEIAKEIYHLNLSDIEEY
GISETGISPGNSLIIIAKAKEGKVESVKASLDKVLEDKIGKAFYPEEKEIAESSEVKVKGNYVSLFILPEDQLEEANKIY
EGEFK

Sequences:

>Translated_165_residues
MKKFLISVLAAAMIGATLTSCGAKDNNGTKVEQSDIKMSMSASDMTNKLVDAGMVTMPVPLDDEIAKEIYHLNLSDIEEY
GISETGISPGNSLIIIAKAKEGKVESVKASLDKVLEDKIGKAFYPEEKEIAESSEVKVKGNYVSLFILPEDQLEEANKIY
EGEFK
>Mature_165_residues
MKKFLISVLAAAMIGATLTSCGAKDNNGTKVEQSDIKMSMSASDMTNKLVDAGMVTMPVPLDDEIAKEIYHLNLSDIEEY
GISETGISPGNSLIIIAKAKEGKVESVKASLDKVLEDKIGKAFYPEEKEIAESSEVKVKGNYVSLFILPEDQLEEANKIY
EGEFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17956; Mature: 17956

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLISVLAAAMIGATLTSCGAKDNNGTKVEQSDIKMSMSASDMTNKLVDAGMVTMPVP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHEEEECCHHHHHHHHHHCCCEEECCC
LDDEIAKEIYHLNLSDIEEYGISETGISPGNSLIIIAKAKEGKVESVKASLDKVLEDKIG
CCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC
KAFYPEEKEIAESSEVKVKGNYVSLFILPEDQLEEANKIYEGEFK
CCCCCCHHHHCCCCCEEEECCEEEEEEECHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKFLISVLAAAMIGATLTSCGAKDNNGTKVEQSDIKMSMSASDMTNKLVDAGMVTMPVP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHEEEECCHHHHHHHHHHCCCEEECCC
LDDEIAKEIYHLNLSDIEEYGISETGISPGNSLIIIAKAKEGKVESVKASLDKVLEDKIG
CCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC
KAFYPEEKEIAESSEVKVKGNYVSLFILPEDQLEEANKIYEGEFK
CCCCCCHHHHCCCCCEEEECCEEEEEEECHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA