| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310404
Identifier: 18310404
GI number: 18310404
Start: 1676773
End: 1677750
Strand: Direct
Name: 18310404
Synonym: CPE1422
Alternate gene names: NA
Gene position: 1676773-1677750 (Clockwise)
Preceding gene: 18310403
Following gene: 18310405
Centisome position: 55.31
GC content: 34.56
Gene sequence:
>978_bases ATGTTTGAAATAAAGATTACAGATATAGATGGTTTTAAACTAGGCCACGCTCAAGACTTTGAAGGTGCTACAGGATGTAC AGTATTACTATGTGAAGAAGGTGCTTCTGGAGGAGTTGATGTTCGCGGTGGTGCTCCTGGAACTAGAGAAACTGATTTAT TAAATCCTATGGAAATGGTTGATAAAGTTCATGCTATAGTATTATCTGGTGGCTCTGCCTTTGGACTTGATTCCTGCTCA GGGGTTATGGAATATCTAGAAAATAAAAATGTTGGATTTGACGTAGGAGTGGCTAAAGTTCCTATAGTATGTGGTGCTGT TTTATTTGACTTAGCCTGTGGTAATCCTAAAATAAGACCTAATAAGGAAATGGGTTTAGAAGCCTGTAAAAATTCTGAAA CCTATCTTGACTCAAAAAACGGTAATATAGGTTGTGGAACAGGTGCCACAGTAGGTAAAGCCTTAAATCAAAAACTTGCT ATGAAAGGTGGTTTTGGAAGCTATGCAGTGCAAGTTGGAGATTTAAAGGTAGGAGCTATTGTAGGAGTTAATAGCCTAGG TGATATTGTTGATCCTAATAATAACAATAAAATAATAGCTGGTGGATTAAGCCAAGATAGGAATTCCTTTATAAACATAG AAGAAAGCTTATTAGCTAATTATTCTAATCCTAAAAATGTTTTTAAAGGAAATACTACTATTGGGTGCATAGTGACTAAT GGTGATTTTAATAAAGCTGAGGCTAATAAAATTGCATCTATGGCTCAAAATGGTTTTGGAAGAACCATTCGCCCTGCTCA CACTATGTTTGATGGTGATACAATATTTACTCTTTCATCAAATAAAGTTAAGGCAGATATAAATGTAGTTGGTCTTTTAG CTGCTCAAGTTATGGAGAAAGCTATTATAAAGGCTGTTAAAGAAGCTGATTCTTCATATGGATTCTTATCACATAAAGAT TTAAAATTTAATGTATAA
Upstream 100 bases:
>100_bases TTTTAAACTCTGTAAATTATCACTTATGTAAAATAGAGTATTATTCTTAAAATATAACATCTAAATCATATAAAACAATT TAATGGAGGTGTATATTATA
Downstream 100 bases:
>100_bases ATTAAAAAGCTCAAACAGATAATAATTCTGTTTGAGCTTTTTTCAAAGATATGTTTAATTTTACTTTCATAAGATAAATC AATTCTACTTGTAATTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MFEIKITDIDGFKLGHAQDFEGATGCTVLLCEEGASGGVDVRGGAPGTRETDLLNPMEMVDKVHAIVLSGGSAFGLDSCS GVMEYLENKNVGFDVGVAKVPIVCGAVLFDLACGNPKIRPNKEMGLEACKNSETYLDSKNGNIGCGTGATVGKALNQKLA MKGGFGSYAVQVGDLKVGAIVGVNSLGDIVDPNNNNKIIAGGLSQDRNSFINIEESLLANYSNPKNVFKGNTTIGCIVTN GDFNKAEANKIASMAQNGFGRTIRPAHTMFDGDTIFTLSSNKVKADINVVGLLAAQVMEKAIIKAVKEADSSYGFLSHKD LKFNV
Sequences:
>Translated_325_residues MFEIKITDIDGFKLGHAQDFEGATGCTVLLCEEGASGGVDVRGGAPGTRETDLLNPMEMVDKVHAIVLSGGSAFGLDSCS GVMEYLENKNVGFDVGVAKVPIVCGAVLFDLACGNPKIRPNKEMGLEACKNSETYLDSKNGNIGCGTGATVGKALNQKLA MKGGFGSYAVQVGDLKVGAIVGVNSLGDIVDPNNNNKIIAGGLSQDRNSFINIEESLLANYSNPKNVFKGNTTIGCIVTN GDFNKAEANKIASMAQNGFGRTIRPAHTMFDGDTIFTLSSNKVKADINVVGLLAAQVMEKAIIKAVKEADSSYGFLSHKD LKFNV >Mature_325_residues MFEIKITDIDGFKLGHAQDFEGATGCTVLLCEEGASGGVDVRGGAPGTRETDLLNPMEMVDKVHAIVLSGGSAFGLDSCS GVMEYLENKNVGFDVGVAKVPIVCGAVLFDLACGNPKIRPNKEMGLEACKNSETYLDSKNGNIGCGTGATVGKALNQKLA MKGGFGSYAVQVGDLKVGAIVGVNSLGDIVDPNNNNKIIAGGLSQDRNSFINIEESLLANYSNPKNVFKGNTTIGCIVTN GDFNKAEANKIASMAQNGFGRTIRPAHTMFDGDTIFTLSSNKVKADINVVGLLAAQVMEKAIIKAVKEADSSYGFLSHKD LKFNV
Specific function: Unknown
COG id: COG3191
COG function: function code EQ; L-aminopeptidase/D-esterase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML1167 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016117 - InterPro: IPR005321 [H]
Pfam domain/function: PF03576 Peptidase_S58 [H]
EC number: NA
Molecular weight: Translated: 34100; Mature: 34100
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFEIKITDIDGFKLGHAQDFEGATGCTVLLCEEGASGGVDVRGGAPGTRETDLLNPMEMV CEEEEEECCCCEECCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHH DKVHAIVLSGGSAFGLDSCSGVMEYLENKNVGFDVGVAKVPIVCGAVLFDLACGNPKIRP HHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCC NKEMGLEACKNSETYLDSKNGNIGCGTGATVGKALNQKLAMKGGFGSYAVQVGDLKVGAI CHHHHHHHHCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEE VGVNSLGDIVDPNNNNKIIAGGLSQDRNSFINIEESLLANYSNPKNVFKGNTTIGCIVTN EECCCCCCCCCCCCCCEEEECCCCCCCCCEECCHHHHHHCCCCCCCEECCCCEEEEEEEC GDFNKAEANKIASMAQNGFGRTIRPAHTMFDGDTIFTLSSNKVKADINVVGLLAAQVMEK CCCCHHHHHHHHHHHHCCCCCCCCCHHEEECCCEEEEEECCEEEECHHHHHHHHHHHHHH AIIKAVKEADSSYGFLSHKDLKFNV HHHHHHHHCCCCCCCEECCCEEECC >Mature Secondary Structure MFEIKITDIDGFKLGHAQDFEGATGCTVLLCEEGASGGVDVRGGAPGTRETDLLNPMEMV CEEEEEECCCCEECCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHH DKVHAIVLSGGSAFGLDSCSGVMEYLENKNVGFDVGVAKVPIVCGAVLFDLACGNPKIRP HHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCC NKEMGLEACKNSETYLDSKNGNIGCGTGATVGKALNQKLAMKGGFGSYAVQVGDLKVGAI CHHHHHHHHCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEE VGVNSLGDIVDPNNNNKIIAGGLSQDRNSFINIEESLLANYSNPKNVFKGNTTIGCIVTN EECCCCCCCCCCCCCCEEEECCCCCCCCCEECCHHHHHHCCCCCCCEECCCCEEEEEEEC GDFNKAEANKIASMAQNGFGRTIRPAHTMFDGDTIFTLSSNKVKADINVVGLLAAQVMEK CCCCHHHHHHHHHHHHCCCCCCCCCHHEEECCCEEEEEECCEEEECHHHHHHHHHHHHHH AIIKAVKEADSSYGFLSHKDLKFNV HHHHHHHHCCCCCCCEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]