| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310403
Identifier: 18310403
GI number: 18310403
Start: 1675816
End: 1676568
Strand: Direct
Name: 18310403
Synonym: CPE1421
Alternate gene names: NA
Gene position: 1675816-1676568 (Clockwise)
Preceding gene: 18310400
Following gene: 18310404
Centisome position: 55.28
GC content: 30.15
Gene sequence:
>753_bases ATGAATGCAGTCTATCAAACTAGACAAAAAACAAGAAAACTAGTAGTTATTGGTATGCTATCTGGTATATCAATATTTCT AGGATTAACAGGATTAGGATTTATAAATATTCCACCTGTTAAGGCTACTATTATGCATATTCCTGTTATAATAGGAGCTA TTATTGAGGGTCCTATTGTAGGAGGATTAATAGGACTAGTTTTTGGATTATTTTCTATGTATCAAGCTTTTACGGCGCCA ATGCCAACTAGCTTTATGTTCTGGAATCCTATTATAGCTTTAGTTCCTAGAATTCTTATAGGTGTGGTAAGTTACTATGT ATATGCATCTATGATTAAAGGATCTAAAAAGAATTTAAAAGCTACATCAATTATAAGTTCTCTTATTCTTGGAGTTCTTC TATTTGTAAGTTCTGAAGCTTTAACAGATTCTTTAACTATATCAGCTATAATCGGTGTTTTATTCTTTTTAGCAAGTATG ATTATCATGTTTAAATTTAAACATAAAAATAAAGAAGAAGCCCTATCTATAGGTACAGCTTCCGTAATTGGAACCTTAAC AAATACCATAGGTGTACTTGGCTTAACATATGTTTTTTATTTAGAAAGATATGCTTCTGCTCTAGGAATATCTGAACATG CTGCAAAATTAACTTTAGCAGGAATAGGAGTTACAAATGGAATTCCTGAAGCATTTATATCAGCCTTAATATCAATTCCT GTTATATTAGGAGTTAGAAAAATTTTAAGATAA
Upstream 100 bases:
>100_bases TCACTGTCGGTATTCTATATTAGAAGCTGAACTATTTTATACGGTTAAAAATTTAACAACCGAATTATATCCCACTGGGA ATAAGAACGGAGGAGAGTCA
Downstream 100 bases:
>100_bases TTTAAGATTATAAATATATTTTAGCGTATAGCTTACTTAAAGTTATACGCTAAAACTTTATTAAGTTATTAGTAAAGGTT TAAATTTTTTAAACTTTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 250; Mature: 250
Protein sequence:
>250_residues MNAVYQTRQKTRKLVVIGMLSGISIFLGLTGLGFINIPPVKATIMHIPVIIGAIIEGPIVGGLIGLVFGLFSMYQAFTAP MPTSFMFWNPIIALVPRILIGVVSYYVYASMIKGSKKNLKATSIISSLILGVLLFVSSEALTDSLTISAIIGVLFFLASM IIMFKFKHKNKEEALSIGTASVIGTLTNTIGVLGLTYVFYLERYASALGISEHAAKLTLAGIGVTNGIPEAFISALISIP VILGVRKILR
Sequences:
>Translated_250_residues MNAVYQTRQKTRKLVVIGMLSGISIFLGLTGLGFINIPPVKATIMHIPVIIGAIIEGPIVGGLIGLVFGLFSMYQAFTAP MPTSFMFWNPIIALVPRILIGVVSYYVYASMIKGSKKNLKATSIISSLILGVLLFVSSEALTDSLTISAIIGVLFFLASM IIMFKFKHKNKEEALSIGTASVIGTLTNTIGVLGLTYVFYLERYASALGISEHAAKLTLAGIGVTNGIPEAFISALISIP VILGVRKILR >Mature_250_residues MNAVYQTRQKTRKLVVIGMLSGISIFLGLTGLGFINIPPVKATIMHIPVIIGAIIEGPIVGGLIGLVFGLFSMYQAFTAP MPTSFMFWNPIIALVPRILIGVVSYYVYASMIKGSKKNLKATSIISSLILGVLLFVSSEALTDSLTISAIIGVLFFLASM IIMFKFKHKNKEEALSIGTASVIGTLTNTIGVLGLTYVFYLERYASALGISEHAAKLTLAGIGVTNGIPEAFISALISIP VILGVRKILR
Specific function: Unknown
COG id: COG4684
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26741; Mature: 26741
Theoretical pI: Translated: 10.49; Mature: 10.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAVYQTRQKTRKLVVIGMLSGISIFLGLTGLGFINIPPVKATIMHIPVIIGAIIEGPIV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHH GGLIGLVFGLFSMYQAFTAPMPTSFMFWNPIIALVPRILIGVVSYYVYASMIKGSKKNLK HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH ATSIISSLILGVLLFVSSEALTDSLTISAIIGVLFFLASMIIMFKFKHKNKEEALSIGTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SVIGTLTNTIGVLGLTYVFYLERYASALGISEHAAKLTLAGIGVTNGIPEAFISALISIP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH VILGVRKILR HHHHHHHHHC >Mature Secondary Structure MNAVYQTRQKTRKLVVIGMLSGISIFLGLTGLGFINIPPVKATIMHIPVIIGAIIEGPIV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHH GGLIGLVFGLFSMYQAFTAPMPTSFMFWNPIIALVPRILIGVVSYYVYASMIKGSKKNLK HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH ATSIISSLILGVLLFVSSEALTDSLTISAIIGVLFFLASMIIMFKFKHKNKEEALSIGTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SVIGTLTNTIGVLGLTYVFYLERYASALGISEHAAKLTLAGIGVTNGIPEAFISALISIP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH VILGVRKILR HHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA