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The map label for this gene is rnfD [H]

Identifier: 18310392

GI number: 18310392

Start: 1663004

End: 1663984

Strand: Direct

Name: rnfD [H]

Synonym: CPE1410

Alternate gene names: 18310392

Gene position: 1663004-1663984 (Clockwise)

Preceding gene: 18310391

Following gene: 18310400

Centisome position: 54.86

GC content: 32.42

Gene sequence:

>981_bases
ATGGTTGATACAAAACAAGAATCTATGGAATCCTTAATATTAAGCGACATAAATGGCGAAAATCTTTTAGTTGATTCATC
TCCTCACATAAAAGATAAATTATCAACACAGAGCATAATGAGAGATGTTTTAATAGCTCTCATTCCAACCTCTTTAGTTG
GTGTATTAGTATTTGGATTAAGAGCAATTTTTATAATTGCAACCTGTGCAATCTCAGCTGTAATTTCTGAATACGCCTTT
CAAAAAATAACAAAAAAAGAAATCACCATAAAGGATTTAAGTGCTATTGTTACAGGAGTTTTACTTGCTTTAAATCTCCC
TATTAATACTCCTCTCTGGGTAGCATGTATTGGCTCAATTGTTGCCATAGTATTAGTAAAGCAAATTTTTGGTGGTATAG
GATGTAATTTTATGAATCCAGCCTTAGCAGCTAGGGCTTTTCTACTAGCAGCTTGGCCTGAAAGCATTAGTATATTTACA
TTAGATGGAATTACTACAGCTACCCCATTAGCTTTACTAAAAAATGGACAAGGAAATCTTCCTCCTTTAAGCAATGCTTT
TCTTGGAAACATTGCAGGATGCATAGGAGAGGTTTCTTCTCTAGCTATACTAATTGGTGCTTTATACTTGCTTTATAGAA
AAGTAATAACGTGGCATATTCCCCTTGTTTATATTAGTACGGTTTTAATATTAACTACTATTATAGGTAGAAATGGCTTT
TTAAGTGGAAATGGAATTTATGAAATCTTTACAGGTGGATTATTTTTAGGAGCCTTTTTCATGGCAACTGATTATGTAAC
TTCTCCACTAACAAAGAAAGGACAAATTATATTTGCCTTTGGCTGTGGCCTTATAACTACTTTAATAAGAATATTTGGTG
GTTATCCTGAAGGGGTGTCATATTCAATTCTTCTTATGAATTTACTTGTACCTGTTATTGATTATTATATTAAGCCTAAA
GCCTTTGGTAATGAAAAATAA

Upstream 100 bases:

>100_bases
TGTACATTTTCCTGTCCTGCAAAAATTTCTATAGTAAATAATATTAGAAATGCTAAGAAATCTCTTAGAAATAAATCTAA
AAATTAAAGGGGTGAAAAAA

Downstream 100 bases:

>100_bases
TTTTTAAATTTGTATATAACTTAATATATTTGACAATAATACTAACTGTAGGGTTATTTAATCTATACAGCTGTTCCTAT
ATAATATTTCTCTACTTTAG

Product: Na-translocating NADH-quinone reductase Nqr2 subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MVDTKQESMESLILSDINGENLLVDSSPHIKDKLSTQSIMRDVLIALIPTSLVGVLVFGLRAIFIIATCAISAVISEYAF
QKITKKEITIKDLSAIVTGVLLALNLPINTPLWVACIGSIVAIVLVKQIFGGIGCNFMNPALAARAFLLAAWPESISIFT
LDGITTATPLALLKNGQGNLPPLSNAFLGNIAGCIGEVSSLAILIGALYLLYRKVITWHIPLVYISTVLILTTIIGRNGF
LSGNGIYEIFTGGLFLGAFFMATDYVTSPLTKKGQIIFAFGCGLITTLIRIFGGYPEGVSYSILLMNLLVPVIDYYIKPK
AFGNEK

Sequences:

>Translated_326_residues
MVDTKQESMESLILSDINGENLLVDSSPHIKDKLSTQSIMRDVLIALIPTSLVGVLVFGLRAIFIIATCAISAVISEYAF
QKITKKEITIKDLSAIVTGVLLALNLPINTPLWVACIGSIVAIVLVKQIFGGIGCNFMNPALAARAFLLAAWPESISIFT
LDGITTATPLALLKNGQGNLPPLSNAFLGNIAGCIGEVSSLAILIGALYLLYRKVITWHIPLVYISTVLILTTIIGRNGF
LSGNGIYEIFTGGLFLGAFFMATDYVTSPLTKKGQIIFAFGCGLITTLIRIFGGYPEGVSYSILLMNLLVPVIDYYIKPK
AFGNEK
>Mature_326_residues
MVDTKQESMESLILSDINGENLLVDSSPHIKDKLSTQSIMRDVLIALIPTSLVGVLVFGLRAIFIIATCAISAVISEYAF
QKITKKEITIKDLSAIVTGVLLALNLPINTPLWVACIGSIVAIVLVKQIFGGIGCNFMNPALAARAFLLAAWPESISIFT
LDGITTATPLALLKNGQGNLPPLSNAFLGNIAGCIGEVSSLAILIGALYLLYRKVITWHIPLVYISTVLILTTIIGRNGF
LSGNGIYEIFTGGLFLGAFFMATDYVTSPLTKKGQIIFAFGCGLITTLIRIFGGYPEGVSYSILLMNLLVPVIDYYIKPK
AFGNEK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=32.9512893982808, Blast_Score=178, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 34996; Mature: 34996

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDTKQESMESLILSDINGENLLVDSSPHIKDKLSTQSIMRDVLIALIPTSLVGVLVFGL
CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAIFIIATCAISAVISEYAFQKITKKEITIKDLSAIVTGVLLALNLPINTPLWVACIGSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VAIVLVKQIFGGIGCNFMNPALAARAFLLAAWPESISIFTLDGITTATPLALLKNGQGNL
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCC
PPLSNAFLGNIAGCIGEVSSLAILIGALYLLYRKVITWHIPLVYISTVLILTTIIGRNGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LSGNGIYEIFTGGLFLGAFFMATDYVTSPLTKKGQIIFAFGCGLITTLIRIFGGYPEGVS
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCH
YSILLMNLLVPVIDYYIKPKAFGNEK
HHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVDTKQESMESLILSDINGENLLVDSSPHIKDKLSTQSIMRDVLIALIPTSLVGVLVFGL
CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAIFIIATCAISAVISEYAFQKITKKEITIKDLSAIVTGVLLALNLPINTPLWVACIGSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VAIVLVKQIFGGIGCNFMNPALAARAFLLAAWPESISIFTLDGITTATPLALLKNGQGNL
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCC
PPLSNAFLGNIAGCIGEVSSLAILIGALYLLYRKVITWHIPLVYISTVLILTTIIGRNGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LSGNGIYEIFTGGLFLGAFFMATDYVTSPLTKKGQIIFAFGCGLITTLIRIFGGYPEGVS
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCH
YSILLMNLLVPVIDYYIKPKAFGNEK
HHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA