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The map label for this gene is rnfC [H]

Identifier: 18310391

GI number: 18310391

Start: 1661680

End: 1662990

Strand: Direct

Name: rnfC [H]

Synonym: CPE1409

Alternate gene names: 18310391

Gene position: 1661680-1662990 (Clockwise)

Preceding gene: 18310389

Following gene: 18310392

Centisome position: 54.82

GC content: 28.99

Gene sequence:

>1311_bases
ATGAGTCTTTTTACTTTTAAAAAAGGACTTCATTTACCTTATAATAAAGAATTTACTAAGGATAAAAGCATAGAAATTTT
TAAACCTAAAAAAGAATTAATTTTCCCACTTTCTCAACATATAGGAGCACCCTGCGAGCCTATAGTAGAGGTTGGTCAAA
AAGTTTTAGTAAATGAAAAAATAGCTGATTCTTCAGCCTTTGTTTCTTCTCCTATTCACTCTAGTGTATCTGGAACTATA
AAAGATATTAGAGAGATTCAATCTATAAATGGATCTAATACACAGGCAATAATCATAGAAAATGATTCTAAATATGAAAA
ATATCCAAAGGAAAATCTTAAATACTCTAGTAAACTTTCCCTAAAAGATGTGGTTAAGTTAGTAAAAGACTATGGCATAG
TTGGCCTTGGTGGTGCTACCTTTCCTTGCCATGTAAAGCTTAATGTTAAAGAGGATAAAGAAATTAAATATATAATTATA
AATGCAGCTGAATGTGAACCCTATTTAACCTGTGATCATAGGGTTATGCTAGAATATACGGAAGAAATAATTGGTGGCTT
AAGAATCCTTTTAGAACTTTTCCCTAAGGCATTAATCTACATAGGTATAGAAGACAATAAATTAAACGCCATAGATAAAT
TTAAAAGCATTTTAGGAGAAGATAATAAAATTAAGGTAATGCCATTAAAAAGTAAATATCCTCAAGGCTCTGAAAAACAC
TTAATTTATGCTTTAACTAAACTTCAAGTTCCTTCTGGAAAGCTTCCTTTAGATATAGGATGCATTGCTTTTAATGTATC
TACTATATATCAATTATATGCTAGTTTAATAAATGGGTTACCTTTAACAGAAAGAATTATAACAGTAACTGGAGATTCCA
TAAGATCCCCTAAAAATTTAAGGGTTAAAATTGGAACACAAGTAAAGGATATAATTGAATTTTGTGGTGGATTTATAAAT
AAACCAAATAAAATCATATTAGGTGGACCAATGATGGGAACTTCTGTAAATTCTTTAGATCTCCCTATTACAAAAGGTAC
CTCTGGCATTTTATGCTTATCTAAAGTTGATACATCTCCTAATAGTCATTGCATAAGATGTGGAAAATGTTTAAATTCAT
GTCCAATGAATTTAATTCCTCAAAAATTAAATGAACTTGCTTTAAAAGATAAATTTGATGAATTTGAATTCCTTGGTGGA
ATGGATTGTTTAGAATGTGGTTGCTGTACATTTTCCTGTCCTGCAAAAATTTCTATAGTAAATAATATTAGAAATGCTAA
GAAATCTCTTAGAAATAAATCTAAAAATTAA

Upstream 100 bases:

>100_bases
TTCACTGAATATAAAATCTTATTAATTAAAAATATGTAATTTCTTAAAAATTTTATACATAGTATTAAAATATGAAGATT
ATATGAAAGGGTGTGTATCC

Downstream 100 bases:

>100_bases
AGGGGTGAAAAAAATGGTTGATACAAAACAAGAATCTATGGAATCCTTAATATTAAGCGACATAAATGGCGAAAATCTTT
TAGTTGATTCATCTCCTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSLFTFKKGLHLPYNKEFTKDKSIEIFKPKKELIFPLSQHIGAPCEPIVEVGQKVLVNEKIADSSAFVSSPIHSSVSGTI
KDIREIQSINGSNTQAIIIENDSKYEKYPKENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNVKEDKEIKYIII
NAAECEPYLTCDHRVMLEYTEEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFKSILGEDNKIKVMPLKSKYPQGSEKH
LIYALTKLQVPSGKLPLDIGCIAFNVSTIYQLYASLINGLPLTERIITVTGDSIRSPKNLRVKIGTQVKDIIEFCGGFIN
KPNKIILGGPMMGTSVNSLDLPITKGTSGILCLSKVDTSPNSHCIRCGKCLNSCPMNLIPQKLNELALKDKFDEFEFLGG
MDCLECGCCTFSCPAKISIVNNIRNAKKSLRNKSKN

Sequences:

>Translated_436_residues
MSLFTFKKGLHLPYNKEFTKDKSIEIFKPKKELIFPLSQHIGAPCEPIVEVGQKVLVNEKIADSSAFVSSPIHSSVSGTI
KDIREIQSINGSNTQAIIIENDSKYEKYPKENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNVKEDKEIKYIII
NAAECEPYLTCDHRVMLEYTEEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFKSILGEDNKIKVMPLKSKYPQGSEKH
LIYALTKLQVPSGKLPLDIGCIAFNVSTIYQLYASLINGLPLTERIITVTGDSIRSPKNLRVKIGTQVKDIIEFCGGFIN
KPNKIILGGPMMGTSVNSLDLPITKGTSGILCLSKVDTSPNSHCIRCGKCLNSCPMNLIPQKLNELALKDKFDEFEFLGG
MDCLECGCCTFSCPAKISIVNNIRNAKKSLRNKSKN
>Mature_435_residues
SLFTFKKGLHLPYNKEFTKDKSIEIFKPKKELIFPLSQHIGAPCEPIVEVGQKVLVNEKIADSSAFVSSPIHSSVSGTIK
DIREIQSINGSNTQAIIIENDSKYEKYPKENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNVKEDKEIKYIIIN
AAECEPYLTCDHRVMLEYTEEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFKSILGEDNKIKVMPLKSKYPQGSEKHL
IYALTKLQVPSGKLPLDIGCIAFNVSTIYQLYASLINGLPLTERIITVTGDSIRSPKNLRVKIGTQVKDIIEFCGGFINK
PNKIILGGPMMGTSVNSLDLPITKGTSGILCLSKVDTSPNSHCIRCGKCLNSCPMNLIPQKLNELALKDKFDEFEFLGGM
DCLECGCCTFSCPAKISIVNNIRNAKKSLRNKSKN

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=433, Percent_Identity=34.4110854503464, Blast_Score=277, Evalue=1e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48327; Mature: 48196

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFTFKKGLHLPYNKEFTKDKSIEIFKPKKELIFPLSQHIGAPCEPIVEVGQKVLVNEK
CCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHCCHHHHCCCCCHHHHHCCHHHHHCCH
IADSSAFVSSPIHSSVSGTIKDIREIQSINGSNTQAIIIENDSKYEKYPKENLKYSSKLS
HCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCHHHCCCCCCCC
LKDVVKLVKDYGIVGLGGATFPCHVKLNVKEDKEIKYIIINAAECEPYLTCDHRVMLEYT
HHHHHHHHHHCCEEEECCCCCEEEEEEECCCCCCEEEEEEEECCCCCEEECCCHHHHHHH
EEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFKSILGEDNKIKVMPLKSKYPQGSEKH
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCE
LIYALTKLQVPSGKLPLDIGCIAFNVSTIYQLYASLINGLPLTERIITVTGDSIRSPKNL
EEEEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCE
RVKIGTQVKDIIEFCGGFINKPNKIILGGPMMGTSVNSLDLPITKGTSGILCLSKVDTSP
EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCEEEEEECCCCC
NSHCIRCGKCLNSCPMNLIPQKLNELALKDKFDEFEFLGGMDCLECGCCTFSCPAKISIV
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHCCCCCCCCCEEHHH
NNIRNAKKSLRNKSKN
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLFTFKKGLHLPYNKEFTKDKSIEIFKPKKELIFPLSQHIGAPCEPIVEVGQKVLVNEK
CCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHCCHHHHCCCCCHHHHHCCHHHHHCCH
IADSSAFVSSPIHSSVSGTIKDIREIQSINGSNTQAIIIENDSKYEKYPKENLKYSSKLS
HCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCHHHCCCCCCCC
LKDVVKLVKDYGIVGLGGATFPCHVKLNVKEDKEIKYIIINAAECEPYLTCDHRVMLEYT
HHHHHHHHHHCCEEEECCCCCEEEEEEECCCCCCEEEEEEEECCCCCEEECCCHHHHHHH
EEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFKSILGEDNKIKVMPLKSKYPQGSEKH
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCE
LIYALTKLQVPSGKLPLDIGCIAFNVSTIYQLYASLINGLPLTERIITVTGDSIRSPKNL
EEEEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCE
RVKIGTQVKDIIEFCGGFINKPNKIILGGPMMGTSVNSLDLPITKGTSGILCLSKVDTSP
EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCEEEEEECCCCC
NSHCIRCGKCLNSCPMNLIPQKLNELALKDKFDEFEFLGGMDCLECGCCTFSCPAKISIV
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHCCCCCCCCCEEHHH
NNIRNAKKSLRNKSKN
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]