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The map label for this gene is yodJ [H]

Identifier: 18310361

GI number: 18310361

Start: 1630393

End: 1631184

Strand: Reverse

Name: yodJ [H]

Synonym: CPE1379

Alternate gene names: 18310361

Gene position: 1631184-1630393 (Counterclockwise)

Preceding gene: 18310362

Following gene: 18310360

Centisome position: 53.81

GC content: 28.91

Gene sequence:

>792_bases
GTGAAACTTAAAAGTTACATATTAACAGGAGTTATTATTACATTAACAATAACTAGTTTTTTTATAGGAAGAAGCTATGA
GTCTTACAAATTGAAAGCTTTAGAGGTTAGCAATGTAAGTTCTAATGAAGAGATAGATAATGAGAATAAAGAGTCAAATA
AAGAAGAGCTTAGTGAAGAGCAGCTTCATATTAAAGAAATAATTTTAAATGATAAGGATGGATTGTTTAAGGTTGTAAAT
AAGGAAAACTCAATAGATAAAAGTTATAAGCCAGAAGAATTAATTATTCCAAAGGTTAATTTTGTAGGTTTAGAAAATGA
ACCTAGAAACAGAGTTAGCAATGTATTAAAGAAAGATTTAGAAAATCTTTTTAGTGATGCAAAAAAAGCTGGGTTAGACT
TATACCTTTCTTGTGCTTATAGGTCTTATGAAGAGCAGGAATATTTATATGGCAGAGCTTTAGAAAAAGAGAAGAGTGAT
TCAAGCAATCTTGTGGCTTTACCAGGAACAAGTGAGCATCAATTAGGATTAGCTGTAGACCTTACTACTAGATCTATAGG
GTTCCAATTAGAAGAATCTTTTGAGGATACAAAAGAAGGACAGTGGCTTTTAGAAAACTCTCATAAATATGGTTTTGTTT
TAAGGTATTTAAAAGGAAAGGAAGATATAACAGGATATAGTTATGAACCTTGGCATTATAGATATATTGGAGATTTAGAA
GTAAGCAAATATTGTTATGATAATAATCTTACATTAGAGGAATTATATGATGAATTGGATATAACAAAATAA

Upstream 100 bases:

>100_bases
TTTACAGTTTAAATTTTTGAAATATTACGTTTATATAATGTTAATTTGGTAATAATTTAAAAGATTAGTCTGTTTAATAA
ATAATTGGAGGTATGTTTAG

Downstream 100 bases:

>100_bases
TATATAAATATAAGATTTTAAAGGAGATATACTATGTATGTGATTAACTTTATAAGAGGGTTTTTAATGGCTTTAGCAGA
TAGTGTTCCAGGGGTTTCTG

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKLKSYILTGVIITLTITSFFIGRSYESYKLKALEVSNVSSNEEIDNENKESNKEELSEEQLHIKEIILNDKDGLFKVVN
KENSIDKSYKPEELIIPKVNFVGLENEPRNRVSNVLKKDLENLFSDAKKAGLDLYLSCAYRSYEEQEYLYGRALEKEKSD
SSNLVALPGTSEHQLGLAVDLTTRSIGFQLEESFEDTKEGQWLLENSHKYGFVLRYLKGKEDITGYSYEPWHYRYIGDLE
VSKYCYDNNLTLEELYDELDITK

Sequences:

>Translated_263_residues
MKLKSYILTGVIITLTITSFFIGRSYESYKLKALEVSNVSSNEEIDNENKESNKEELSEEQLHIKEIILNDKDGLFKVVN
KENSIDKSYKPEELIIPKVNFVGLENEPRNRVSNVLKKDLENLFSDAKKAGLDLYLSCAYRSYEEQEYLYGRALEKEKSD
SSNLVALPGTSEHQLGLAVDLTTRSIGFQLEESFEDTKEGQWLLENSHKYGFVLRYLKGKEDITGYSYEPWHYRYIGDLE
VSKYCYDNNLTLEELYDELDITK
>Mature_263_residues
MKLKSYILTGVIITLTITSFFIGRSYESYKLKALEVSNVSSNEEIDNENKESNKEELSEEQLHIKEIILNDKDGLFKVVN
KENSIDKSYKPEELIIPKVNFVGLENEPRNRVSNVLKKDLENLFSDAKKAGLDLYLSCAYRSYEEQEYLYGRALEKEKSD
SSNLVALPGTSEHQLGLAVDLTTRSIGFQLEESFEDTKEGQWLLENSHKYGFVLRYLKGKEDITGYSYEPWHYRYIGDLE
VSKYCYDNNLTLEELYDELDITK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 30472; Mature: 30472

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKSYILTGVIITLTITSFFIGRSYESYKLKALEVSNVSSNEEIDNENKESNKEELSEE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
QLHIKEIILNDKDGLFKVVNKENSIDKSYKPEELIIPKVNFVGLENEPRNRVSNVLKKDL
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHH
ENLFSDAKKAGLDLYLSCAYRSYEEQEYLYGRALEKEKSDSSNLVALPGTSEHQLGLAVD
HHHHHHHHHCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEE
LTTRSIGFQLEESFEDTKEGQWLLENSHKYGFVLRYLKGKEDITGYSYEPWHYRYIGDLE
EEEHHHCCEEHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCEE
VSKYCYDNNLTLEELYDELDITK
EEHEEECCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKLKSYILTGVIITLTITSFFIGRSYESYKLKALEVSNVSSNEEIDNENKESNKEELSEE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
QLHIKEIILNDKDGLFKVVNKENSIDKSYKPEELIIPKVNFVGLENEPRNRVSNVLKKDL
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHH
ENLFSDAKKAGLDLYLSCAYRSYEEQEYLYGRALEKEKSDSSNLVALPGTSEHQLGLAVD
HHHHHHHHHCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEE
LTTRSIGFQLEESFEDTKEGQWLLENSHKYGFVLRYLKGKEDITGYSYEPWHYRYIGDLE
EEEHHHCCEEHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCEE
VSKYCYDNNLTLEELYDELDITK
EEHEEECCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]