| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310360
Identifier: 18310360
GI number: 18310360
Start: 1629448
End: 1630359
Strand: Reverse
Name: 18310360
Synonym: CPE1378
Alternate gene names: NA
Gene position: 1630359-1629448 (Counterclockwise)
Preceding gene: 18310361
Following gene: 18310359
Centisome position: 53.78
GC content: 27.08
Gene sequence:
>912_bases ATGTATGTGATTAACTTTATAAGAGGGTTTTTAATGGCTTTAGCAGATAGTGTTCCAGGGGTTTCTGGTGGTACTATAGC ATTTATAATGGGATTTTATAATAAGTTTATAAGTTCATTAAATGCTTTAACATCTACAAAAAAAACTGATGTAAGCAAAA AAGATGCTATAATATTCTTATTAAAATTAGGAATAGGTTGGATAACTGGTATGGTTTTATCAATATTATTTATAGCATCA ATATTTGATAAAGAAATATATAAAATCAGTTCTTTATTTACTGGATTTATAATATTTTCTATACCAATAATAATTAGTGA AGACAAAGAATCATTAAAGAAAAACTATGGATACATAATATATGCTATTTTAGGAATAGCTATTGTTGCTGCAATAACAT ATTTTAATCCAGCTACAGGAAGTGCAAAAGGAACAAGTTTAGTATTAAATGAGTTTTCATTACCACTTGCACTATATGTT TTCTTTGCTGGAATGATTGCTATATCAGCAATGGTTTTACCAGGGATATCAGGATCAACATTACTTTTAATATTTGGTCT TTATGCACCTGTTGTAAATGGAGTGAAAGAAGTTTTAACATTTAATTTTAGTTATTTACCTATGCTTATGGTTTTTGGAC TAGGGGTAGTTGTAGGAATAATAACTACAATAAGATTAATAAAATTCTTACTTTCAAATTATAGGTCTCAAATGATTTAT TTTATAATAGGATTAATGATTGGATCTATATATGCAGTTTTTATGGGACCAACTACATTAGAGATTCCAAAGGCTGCTAT GAATTTAAGTAGCTTTAATTTCCTATTCTTTATTATAGGAGGAGCTTTAATTTTAGGATTGCAACAGTTAAAAGGATACC TTGAGAAGAAAGAAAAAGTTTCTAATATATAA
Upstream 100 bases:
>100_bases CAAATATTGTTATGATAATAATCTTACATTAGAGGAATTATATGATGAATTGGATATAACAAAATAATATATAAATATAA GATTTTAAAGGAGATATACT
Downstream 100 bases:
>100_bases AAAATATATAGTAGCTGTCATTACGTAGAAGTAATGACAGCTTTTTCTTTAATATTGTAGATTTTTAGAATATAATAAGA GAAATAGAGGATTGTAGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MYVINFIRGFLMALADSVPGVSGGTIAFIMGFYNKFISSLNALTSTKKTDVSKKDAIIFLLKLGIGWITGMVLSILFIAS IFDKEIYKISSLFTGFIIFSIPIIISEDKESLKKNYGYIIYAILGIAIVAAITYFNPATGSAKGTSLVLNEFSLPLALYV FFAGMIAISAMVLPGISGSTLLLIFGLYAPVVNGVKEVLTFNFSYLPMLMVFGLGVVVGIITTIRLIKFLLSNYRSQMIY FIIGLMIGSIYAVFMGPTTLEIPKAAMNLSSFNFLFFIIGGALILGLQQLKGYLEKKEKVSNI
Sequences:
>Translated_303_residues MYVINFIRGFLMALADSVPGVSGGTIAFIMGFYNKFISSLNALTSTKKTDVSKKDAIIFLLKLGIGWITGMVLSILFIAS IFDKEIYKISSLFTGFIIFSIPIIISEDKESLKKNYGYIIYAILGIAIVAAITYFNPATGSAKGTSLVLNEFSLPLALYV FFAGMIAISAMVLPGISGSTLLLIFGLYAPVVNGVKEVLTFNFSYLPMLMVFGLGVVVGIITTIRLIKFLLSNYRSQMIY FIIGLMIGSIYAVFMGPTTLEIPKAAMNLSSFNFLFFIIGGALILGLQQLKGYLEKKEKVSNI >Mature_303_residues MYVINFIRGFLMALADSVPGVSGGTIAFIMGFYNKFISSLNALTSTKKTDVSKKDAIIFLLKLGIGWITGMVLSILFIAS IFDKEIYKISSLFTGFIIFSIPIIISEDKESLKKNYGYIIYAILGIAIVAAITYFNPATGSAKGTSLVLNEFSLPLALYV FFAGMIAISAMVLPGISGSTLLLIFGLYAPVVNGVKEVLTFNFSYLPMLMVFGLGVVVGIITTIRLIKFLLSNYRSQMIY FIIGLMIGSIYAVFMGPTTLEIPKAAMNLSSFNFLFFIIGGALILGLQQLKGYLEKKEKVSNI
Specific function: Unknown
COG id: COG2035
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33063; Mature: 33063
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYVINFIRGFLMALADSVPGVSGGTIAFIMGFYNKFISSLNALTSTKKTDVSKKDAIIFL CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHH LKLGIGWITGMVLSILFIASIFDKEIYKISSLFTGFIIFSIPIIISEDKESLKKNYGYII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHCCHHH YAILGIAIVAAITYFNPATGSAKGTSLVLNEFSLPLALYVFFAGMIAISAMVLPGISGST HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LLLIFGLYAPVVNGVKEVLTFNFSYLPMLMVFGLGVVVGIITTIRLIKFLLSNYRSQMIY HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIIGLMIGSIYAVFMGPTTLEIPKAAMNLSSFNFLFFIIGGALILGLQQLKGYLEKKEKV HHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SNI CCC >Mature Secondary Structure MYVINFIRGFLMALADSVPGVSGGTIAFIMGFYNKFISSLNALTSTKKTDVSKKDAIIFL CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHH LKLGIGWITGMVLSILFIASIFDKEIYKISSLFTGFIIFSIPIIISEDKESLKKNYGYII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHCCHHH YAILGIAIVAAITYFNPATGSAKGTSLVLNEFSLPLALYVFFAGMIAISAMVLPGISGST HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LLLIFGLYAPVVNGVKEVLTFNFSYLPMLMVFGLGVVVGIITTIRLIKFLLSNYRSQMIY HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIIGLMIGSIYAVFMGPTTLEIPKAAMNLSSFNFLFFIIGGALILGLQQLKGYLEKKEKV HHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SNI CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA