| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yegX [C]
Identifier: 18310343
GI number: 18310343
Start: 1604254
End: 1605129
Strand: Reverse
Name: yegX [C]
Synonym: CPE1361
Alternate gene names: 18310343
Gene position: 1605129-1604254 (Counterclockwise)
Preceding gene: 18310344
Following gene: 18310342
Centisome position: 52.95
GC content: 30.71
Gene sequence:
>876_bases ATGAAAGTTGGAGTTTATCATTATTGGAGAGGTACTTCAAGTGCTATAGAACAAGCTCAGAATGTAGTTAGAACTCTAGG AGATAAACATATTGATTGTAAGATTGCAATAGATGTAGAGCAAATAGATGGATTATCAAACAAAGAATTAAATAATAGTG TTCTTCAATTAGCAGAAGAATTAGAAAGATTAATAGGAGCTGAGATTTGTATTTATTGTAATACAAACTATGCTAGAAAT GTATTAGATAGCAGGCTAGGAAAGTATTCATTATGGGTAGCTCATTATGGAGTAAATAAGCCAGGAGATAATCATATATG GGATAAATGGGCAGGATTCCAATATTCAGATAGTGGAACTTCAAATGTAAATGGAAGCTTAGATTTAGATGAATTTACAG AAGAAATTTTTATTGATGGAGAAAGTTTAAAAGCAACTGAAAATAAAACATTTCCTACTAATGCAAGAGCAAAGATAGCA TTAGACCAAAGAAGTAATCCGAGTGATGATTACACAGACTTAGGAGAAGTATATGCAGGTGAAAGAATACAAGTATTAGC AGAGATTTGTGACAAAGAGAATTACTTACCAGTTAAATATTGGGAATATTCATTAGGATGTGAAAGCTCAAAGGTTTGGG TTAATGCAAATGAGGATTACTTAGAGATAGATACTAATGCTAGATCATTTAATATAATTACAGAACTTGATGTTAGGTAT GAACCAACATCTAACTCAGATAGAATGGGATATGTTAAAAATAATGAGAGATTATATGTCCATAAAATTGAAGGAAACTA TGCCCTTGCAACATACTACGAAGGAAATGGATATAAAACTGCTTGGTTTACAAAACAATATATAATTAAAGATTAA
Upstream 100 bases:
>100_bases GGATATGAAGTTTGTTATATTAAAATTACAGAAGGAAGAGGATATATAGATCCATGCTTTGAAGAAAATTATAATAAAGC AATAGCAGATAGCAGCAGGA
Downstream 100 bases:
>100_bases TAATTAAGTCTAGTTGGGATACTCCTAACTAGACTTTTTTTGTTTACAAATTTGTTATATAATGTTAATGAATTGAAGTG TTAGGAGAAGAGGTAGTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: ORF10 [H]
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MKVGVYHYWRGTSSAIEQAQNVVRTLGDKHIDCKIAIDVEQIDGLSNKELNNSVLQLAEELERLIGAEICIYCNTNYARN VLDSRLGKYSLWVAHYGVNKPGDNHIWDKWAGFQYSDSGTSNVNGSLDLDEFTEEIFIDGESLKATENKTFPTNARAKIA LDQRSNPSDDYTDLGEVYAGERIQVLAEICDKENYLPVKYWEYSLGCESSKVWVNANEDYLEIDTNARSFNIITELDVRY EPTSNSDRMGYVKNNERLYVHKIEGNYALATYYEGNGYKTAWFTKQYIIKD
Sequences:
>Translated_291_residues MKVGVYHYWRGTSSAIEQAQNVVRTLGDKHIDCKIAIDVEQIDGLSNKELNNSVLQLAEELERLIGAEICIYCNTNYARN VLDSRLGKYSLWVAHYGVNKPGDNHIWDKWAGFQYSDSGTSNVNGSLDLDEFTEEIFIDGESLKATENKTFPTNARAKIA LDQRSNPSDDYTDLGEVYAGERIQVLAEICDKENYLPVKYWEYSLGCESSKVWVNANEDYLEIDTNARSFNIITELDVRY EPTSNSDRMGYVKNNERLYVHKIEGNYALATYYEGNGYKTAWFTKQYIIKD >Mature_291_residues MKVGVYHYWRGTSSAIEQAQNVVRTLGDKHIDCKIAIDVEQIDGLSNKELNNSVLQLAEELERLIGAEICIYCNTNYARN VLDSRLGKYSLWVAHYGVNKPGDNHIWDKWAGFQYSDSGTSNVNGSLDLDEFTEEIFIDGESLKATENKTFPTNARAKIA LDQRSNPSDDYTDLGEVYAGERIQVLAEICDKENYLPVKYWEYSLGCESSKVWVNANEDYLEIDTNARSFNIITELDVRY EPTSNSDRMGYVKNNERLYVHKIEGNYALATYYEGNGYKTAWFTKQYIIKD
Specific function: Unknown
COG id: COG3757
COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To C.perfringens CPE1502 [H]
Homologues:
Organism=Escherichia coli, GI87082043, Length=143, Percent_Identity=32.1678321678322, Blast_Score=69, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002508 [H]
Pfam domain/function: PF01520 Amidase_3 [H]
EC number: NA
Molecular weight: Translated: 33313; Mature: 33313
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVGVYHYWRGTSSAIEQAQNVVRTLGDKHIDCKIAIDVEQIDGLSNKELNNSVLQLAEE CCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHHHH LERLIGAEICIYCNTNYARNVLDSRLGKYSLWVAHYGVNKPGDNHIWDKWAGFQYSDSGT HHHHHCCEEEEEECCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHCCCEECCCCC SNVNGSLDLDEFTEEIFIDGESLKATENKTFPTNARAKIALDQRSNPSDDYTDLGEVYAG CCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCC ERIQVLAEICDKENYLPVKYWEYSLGCESSKVWVNANEDYLEIDTNARSFNIITELDVRY CHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEEEEEEEEE EPTSNSDRMGYVKNNERLYVHKIEGNYALATYYEGNGYKTAWFTKQYIIKD CCCCCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCEEEEEEEEEEEECC >Mature Secondary Structure MKVGVYHYWRGTSSAIEQAQNVVRTLGDKHIDCKIAIDVEQIDGLSNKELNNSVLQLAEE CCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHHHH LERLIGAEICIYCNTNYARNVLDSRLGKYSLWVAHYGVNKPGDNHIWDKWAGFQYSDSGT HHHHHCCEEEEEECCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHCCCEECCCCC SNVNGSLDLDEFTEEIFIDGESLKATENKTFPTNARAKIALDQRSNPSDDYTDLGEVYAG CCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCC ERIQVLAEICDKENYLPVKYWEYSLGCESSKVWVNANEDYLEIDTNARSFNIITELDVRY CHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEEEEEEEEE EPTSNSDRMGYVKNNERLYVHKIEGNYALATYYEGNGYKTAWFTKQYIIKD CCCCCCCCEEEEECCCEEEEEEECCCEEEEEEEECCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2901768 [H]