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The map label for this gene is lyc [H]

Identifier: 18310296

GI number: 18310296

Start: 1554845

End: 1555810

Strand: Reverse

Name: lyc [H]

Synonym: CPE1314

Alternate gene names: 18310296

Gene position: 1555810-1554845 (Counterclockwise)

Preceding gene: 18310297

Following gene: 18310295

Centisome position: 51.32

GC content: 31.57

Gene sequence:

>966_bases
ATGCAAGATAAAAATCCATTAAGTACATTTGGTCCAGATTTAAATGAATTTAGCAGAGATGTTAATTTCTTAACACTAGC
TAAAAATTCAGATTTTATTTATTTAAGAGCTTCAGGCTCTGGAACAGGTAAACTAAGAATTGATAATAAGTTTTTAGAGT
TTGCAAAAGAGTGCAGAAGATTAGGAATTCCATGTGGTGCATATCATTTTGCTAAACCTTCTAAGGATTTAGATAGTGCT
GTTATTCAAGCAGATCAATTTATTGATGTTTTGCAACAGGGTTTTGGAGATGGGGACTATGGAGATCTATTTCCAGTATT
AGATGTGGAAACTCCTACAGATAAATCCTTAACTACTACAGAGCTTGTAAATTGGATTGATAGATTTAGAGATAGATTTG
AAGAAAAAACTAGAAGAAGATTAATGTTATATACAGGATTATTCTTCATAGGTCTATATGATGATTTTAAGGTTCCAGGA
AAAGGATACCCTTTAAGTGATATGCCTTTATGGATTGCTATGTACACTAGAATTCCTTCTAATCCAAGGATTCCACCAAA
TGTTGGAGGATGGAAGAGATGGACTATGTGGCAATTTACTGATGAAGGAAAATTAGATGGAGTTGGAAGTCCGGTAGATT
TAAACTGGGGGCCAAATAGCATAGATAGTTTAATGCCACCTTCTGCAGTTACTGGACTAAACGCATATATATCTGGTAAT
AAAATATTTGTTAATTGGACAGCTAATAAAGAGGATGATTTAAATGGATATAATGTTTTTGTAAATGATAATTATGCAGG
AACATTACCAAGAAAAGCAACTAAAATTGTAATTGATAAAAGTAGATTTTATCTTCCAAAAGGAAAGCCAATAAAAATAT
CAATAGAAGCATTTGATATTACTGGAGACTTTTCAAAAGAAAGAACTGAATATATTTTAGATAATAATGGTGAATTCCTA
GGATAG

Upstream 100 bases:

>100_bases
AAATCTTTAAAGGTTAATAGAGAATAATTTTATTTAGTAACAACTTTCCCTGTAATATTATATTTTATATAGTAAGAACT
ACTTTGCAGGGAGAGTATTA

Downstream 100 bases:

>100_bases
ATTGGTTTTTATGTTAAATAGAGTTAAATTTTTTTAGCTCTATTTAATTTTTCTCCAAAAGCTATAAAAATTTTGTTATA
ATAAGAAATGTTATTATATT

Product: muramidase

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MQDKNPLSTFGPDLNEFSRDVNFLTLAKNSDFIYLRASGSGTGKLRIDNKFLEFAKECRRLGIPCGAYHFAKPSKDLDSA
VIQADQFIDVLQQGFGDGDYGDLFPVLDVETPTDKSLTTTELVNWIDRFRDRFEEKTRRRLMLYTGLFFIGLYDDFKVPG
KGYPLSDMPLWIAMYTRIPSNPRIPPNVGGWKRWTMWQFTDEGKLDGVGSPVDLNWGPNSIDSLMPPSAVTGLNAYISGN
KIFVNWTANKEDDLNGYNVFVNDNYAGTLPRKATKIVIDKSRFYLPKGKPIKISIEAFDITGDFSKERTEYILDNNGEFL
G

Sequences:

>Translated_321_residues
MQDKNPLSTFGPDLNEFSRDVNFLTLAKNSDFIYLRASGSGTGKLRIDNKFLEFAKECRRLGIPCGAYHFAKPSKDLDSA
VIQADQFIDVLQQGFGDGDYGDLFPVLDVETPTDKSLTTTELVNWIDRFRDRFEEKTRRRLMLYTGLFFIGLYDDFKVPG
KGYPLSDMPLWIAMYTRIPSNPRIPPNVGGWKRWTMWQFTDEGKLDGVGSPVDLNWGPNSIDSLMPPSAVTGLNAYISGN
KIFVNWTANKEDDLNGYNVFVNDNYAGTLPRKATKIVIDKSRFYLPKGKPIKISIEAFDITGDFSKERTEYILDNNGEFL
G
>Mature_321_residues
MQDKNPLSTFGPDLNEFSRDVNFLTLAKNSDFIYLRASGSGTGKLRIDNKFLEFAKECRRLGIPCGAYHFAKPSKDLDSA
VIQADQFIDVLQQGFGDGDYGDLFPVLDVETPTDKSLTTTELVNWIDRFRDRFEEKTRRRLMLYTGLFFIGLYDDFKVPG
KGYPLSDMPLWIAMYTRIPSNPRIPPNVGGWKRWTMWQFTDEGKLDGVGSPVDLNWGPNSIDSLMPPSAVTGLNAYISGN
KIFVNWTANKEDDLNGYNVFVNDNYAGTLPRKATKIVIDKSRFYLPKGKPIKISIEAFDITGDFSKERTEYILDNNGEFL
G

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

Organism=Escherichia coli, GI87082043, Length=223, Percent_Identity=27.3542600896861, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF08239 SH3_3 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 36361; Mature: 36361

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDKNPLSTFGPDLNEFSRDVNFLTLAKNSDFIYLRASGSGTGKLRIDNKFLEFAKECRR
CCCCCCCHHCCCCHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEECHHHHHHHHHHHH
LGIPCGAYHFAKPSKDLDSAVIQADQFIDVLQQGFGDGDYGDLFPVLDVETPTDKSLTTT
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCHHH
ELVNWIDRFRDRFEEKTRRRLMLYTGLFFIGLYDDFKVPGKGYPLSDMPLWIAMYTRIPS
HHHHHHHHHHHHHHHHHHHEEHHHHHEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCC
NPRIPPNVGGWKRWTMWQFTDEGKLDGVGSPVDLNWGPNSIDSLMPPSAVTGLNAYISGN
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCHHHCCCCHHHCCCEEEEECC
KIFVNWTANKEDDLNGYNVFVNDNYAGTLPRKATKIVIDKSRFYLPKGKPIKISIEAFDI
EEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCEEECCCCCEEEEEEEEEEE
TGDFSKERTEYILDNNGEFLG
CCCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure
MQDKNPLSTFGPDLNEFSRDVNFLTLAKNSDFIYLRASGSGTGKLRIDNKFLEFAKECRR
CCCCCCCHHCCCCHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEECHHHHHHHHHHHH
LGIPCGAYHFAKPSKDLDSAVIQADQFIDVLQQGFGDGDYGDLFPVLDVETPTDKSLTTT
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCHHH
ELVNWIDRFRDRFEEKTRRRLMLYTGLFFIGLYDDFKVPGKGYPLSDMPLWIAMYTRIPS
HHHHHHHHHHHHHHHHHHHEEHHHHHEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCC
NPRIPPNVGGWKRWTMWQFTDEGKLDGVGSPVDLNWGPNSIDSLMPPSAVTGLNAYISGN
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCHHHCCCCHHHCCCEEEEECC
KIFVNWTANKEDDLNGYNVFVNDNYAGTLPRKATKIVIDKSRFYLPKGKPIKISIEAFDI
EEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCEEECCCCCEEEEEEEEEEE
TGDFSKERTEYILDNNGEFLG
CCCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]