| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ppcA [H]
Identifier: 18310076
GI number: 18310076
Start: 1296398
End: 1298011
Strand: Direct
Name: ppcA [H]
Synonym: CPE1094
Alternate gene names: 18310076
Gene position: 1296398-1298011 (Clockwise)
Preceding gene: 18310075
Following gene: 18310077
Centisome position: 42.77
GC content: 31.1
Gene sequence:
>1614_bases ATGAAGATACCTTGTTCCATGATGACTCAACATCCGGATAATGTAGAAACTTATATTTCAATACAACAAGAACCAGCAGA AGCGATAAAAGGATTAACACCACAAGATAAAGGTGGTTTAGGAATAGAAGAAGTTATGATAGATTTTGAAGGAAAGTTAA CACCTTACCATCAAACATCACAAATAGCATTAGGATTAATTTCAAATGGTATAATTCCAGGAAAAGACGTTAGAGTAACT CCTAGAATACCTAATGCAAATAAAGAATCAGTATTTAGACAACTTATGAGTATAATGTCTATAATTGAAACAAATGTTCA ATCAAAAGAATTAACTGGAACTCCAGCAATCTCAGAGGTTGTTGTTCCTATGATTGAAACTGGTAAAGAAATTTCAGAGT TTCAAGATAGAGTTAACTCAGTAGTTGATATGGGGAATAAAAACTACAAAACTAAATTAGATTTAAATAGTGTTAGAATA ATACCTCTAGTTGAGGATGTACCTGCACTAGCAAACATAGATAGAATATTAGATGAACATTACGAAATAGAAAAGAGTAA AGGACATATTTTAAAAGATCTTAGAATAATGATAGCAAGATCTGATACTGCTATGTCTTATGGATTAATTTCAGGAGTTT TATCAGTTCTTATGGCAGTTGATGGAGCTTATAAATGGGGAGAAAAACATGGAGTAACTATAAGCCCAATCTTAGGTTGT GGATCACTTCCATTTAGAGGACATTTCTCAGAAGAAAACATAGATGAAATCCTTGCTACATATAGTGGAATTAAAACTTT CACATTTCAATCTGCTTTAAGATATGATCATGGTGAAGAAGCGACTAAACATGCAGTTAGAGAATTGAAAGAAAAAATTG CACAATCAAAACCTAGAAACTTTAGTGAAGAAGATAAAGATTTAATGAAAGAATTCATAGGAATCTGTTCAAAACATTAT CTTCAAACATTCTTAAAGGTAATAGATACAGTTTCATTTGTATCTGACTTTATTCCTAAGAATAGAGATAGATTAACAAA AGCTAAAACTGGATTAGAATATAATAGAGAAGTAGCAAACTTAGACAACGTAGCGGATTTAGTTAAGGATGAAGTATTAA AACAAGAAATTCTTAGCATAGATAACTCAAAAGAATATGCAGTTCCAAGAGCTATATCATTTACTGGAGCTATGTACACA TTAGGAATGCCACCTGAACTTATGGGAATGGGTAGAGCATTAAACGAAATAAAAACTAAGTATGGTCAAGAAGGTATAGA TAAACTTTTAGAAATATACCCAATCTTAAGAAAAGACTTAGCATTTGCTGCTAGATTTGCAAATGGAGGAGTTTCTAAGA AGATAATAGATGAAGAGGCTAGACAAGAATATAAAGAAGACATGAAATATGTAAATGAAATTCTTAACCTTGGATTGGAT TATGATTTCTTAAACGAAAATGAATTCTATCATACTTTACTTAAAACTACAAAACCTATAATAATGCACTTAATGGGACT TGAGGAAAATGTAATGCGTAACAGCACAGAAGAACTTAAAATCCTAAATGAGTGGATAGTAAGAATGGGTAAAGTAAGAG GAAGTATAGGCTAA
Upstream 100 bases:
>100_bases AATTGCATTTTTATTTTAAAAACACTTGATTTTAATAAATTGTTGCAATATAATTAACTTATAAATTTCATTTTTTTTAA AACGAAAAGGGGGACTTATT
Downstream 100 bases:
>100_bases AATATATTTGGTATAAATTAGATATATGGTAATTTATATAATTATACTATAACAAAAATGCCAATAAACATGAATTGAGG CCAATAAATAATATTGATGA
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 537; Mature: 537
Protein sequence:
>537_residues MKIPCSMMTQHPDNVETYISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTSQIALGLISNGIIPGKDVRVT PRIPNANKESVFRQLMSIMSIIETNVQSKELTGTPAISEVVVPMIETGKEISEFQDRVNSVVDMGNKNYKTKLDLNSVRI IPLVEDVPALANIDRILDEHYEIEKSKGHILKDLRIMIARSDTAMSYGLISGVLSVLMAVDGAYKWGEKHGVTISPILGC GSLPFRGHFSEENIDEILATYSGIKTFTFQSALRYDHGEEATKHAVRELKEKIAQSKPRNFSEEDKDLMKEFIGICSKHY LQTFLKVIDTVSFVSDFIPKNRDRLTKAKTGLEYNREVANLDNVADLVKDEVLKQEILSIDNSKEYAVPRAISFTGAMYT LGMPPELMGMGRALNEIKTKYGQEGIDKLLEIYPILRKDLAFAARFANGGVSKKIIDEEARQEYKEDMKYVNEILNLGLD YDFLNENEFYHTLLKTTKPIIMHLMGLEENVMRNSTEELKILNEWIVRMGKVRGSIG
Sequences:
>Translated_537_residues MKIPCSMMTQHPDNVETYISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTSQIALGLISNGIIPGKDVRVT PRIPNANKESVFRQLMSIMSIIETNVQSKELTGTPAISEVVVPMIETGKEISEFQDRVNSVVDMGNKNYKTKLDLNSVRI IPLVEDVPALANIDRILDEHYEIEKSKGHILKDLRIMIARSDTAMSYGLISGVLSVLMAVDGAYKWGEKHGVTISPILGC GSLPFRGHFSEENIDEILATYSGIKTFTFQSALRYDHGEEATKHAVRELKEKIAQSKPRNFSEEDKDLMKEFIGICSKHY LQTFLKVIDTVSFVSDFIPKNRDRLTKAKTGLEYNREVANLDNVADLVKDEVLKQEILSIDNSKEYAVPRAISFTGAMYT LGMPPELMGMGRALNEIKTKYGQEGIDKLLEIYPILRKDLAFAARFANGGVSKKIIDEEARQEYKEDMKYVNEILNLGLD YDFLNENEFYHTLLKTTKPIIMHLMGLEENVMRNSTEELKILNEWIVRMGKVRGSIG >Mature_537_residues MKIPCSMMTQHPDNVETYISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTSQIALGLISNGIIPGKDVRVT PRIPNANKESVFRQLMSIMSIIETNVQSKELTGTPAISEVVVPMIETGKEISEFQDRVNSVVDMGNKNYKTKLDLNSVRI IPLVEDVPALANIDRILDEHYEIEKSKGHILKDLRIMIARSDTAMSYGLISGVLSVLMAVDGAYKWGEKHGVTISPILGC GSLPFRGHFSEENIDEILATYSGIKTFTFQSALRYDHGEEATKHAVRELKEKIAQSKPRNFSEEDKDLMKEFIGICSKHY LQTFLKVIDTVSFVSDFIPKNRDRLTKAKTGLEYNREVANLDNVADLVKDEVLKQEILSIDNSKEYAVPRAISFTGAMYT LGMPPELMGMGRALNEIKTKYGQEGIDKLLEIYPILRKDLAFAARFANGGVSKKIIDEEARQEYKEDMKYVNEILNLGLD YDFLNENEFYHTLLKTTKPIIMHLMGLEENVMRNSTEELKILNEWIVRMGKVRGSIG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG1892
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR007566 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 60495; Mature: 60495
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIPCSMMTQHPDNVETYISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTS CCCCHHHHHCCCCCCEEHEEECCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHH QIALGLISNGIIPGKDVRVTPRIPNANKESVFRQLMSIMSIIETNVQSKELTGTPAISEV HHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH VVPMIETGKEISEFQDRVNSVVDMGNKNYKTKLDLNSVRIIPLVEDVPALANIDRILDEH HHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEHHCCHHHHHHHHHHHHH YEIEKSKGHILKDLRIMIARSDTAMSYGLISGVLSVLMAVDGAYKWGEKHGVTISPILGC HHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEHHHCC GSLPFRGHFSEENIDEILATYSGIKTFTFQSALRYDHGEEATKHAVRELKEKIAQSKPRN CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC FSEEDKDLMKEFIGICSKHYLQTFLKVIDTVSFVSDFIPKNRDRLTKAKTGLEYNREVAN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH LDNVADLVKDEVLKQEILSIDNSKEYAVPRAISFTGAMYTLGMPPELMGMGRALNEIKTK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEECCCCHHHHHHHHHHHHHHHH YGQEGIDKLLEIYPILRKDLAFAARFANGGVSKKIIDEEARQEYKEDMKYVNEILNLGLD HCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YDFLNENEFYHTLLKTTKPIIMHLMGLEENVMRNSTEELKILNEWIVRMGKVRGSIG CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKIPCSMMTQHPDNVETYISIQQEPAEAIKGLTPQDKGGLGIEEVMIDFEGKLTPYHQTS CCCCHHHHHCCCCCCEEHEEECCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHH QIALGLISNGIIPGKDVRVTPRIPNANKESVFRQLMSIMSIIETNVQSKELTGTPAISEV HHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH VVPMIETGKEISEFQDRVNSVVDMGNKNYKTKLDLNSVRIIPLVEDVPALANIDRILDEH HHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEHHCCHHHHHHHHHHHHH YEIEKSKGHILKDLRIMIARSDTAMSYGLISGVLSVLMAVDGAYKWGEKHGVTISPILGC HHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEHHHCC GSLPFRGHFSEENIDEILATYSGIKTFTFQSALRYDHGEEATKHAVRELKEKIAQSKPRN CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC FSEEDKDLMKEFIGICSKHYLQTFLKVIDTVSFVSDFIPKNRDRLTKAKTGLEYNREVAN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH LDNVADLVKDEVLKQEILSIDNSKEYAVPRAISFTGAMYTLGMPPELMGMGRALNEIKTK HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEECCCCHHHHHHHHHHHHHHHH YGQEGIDKLLEIYPILRKDLAFAARFANGGVSKKIIDEEARQEYKEDMKYVNEILNLGLD HCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YDFLNENEFYHTLLKTTKPIIMHLMGLEENVMRNSTEELKILNEWIVRMGKVRGSIG CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA