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The map label for this gene is xerD [H]

Identifier: 18310077

GI number: 18310077

Start: 1298199

End: 1299215

Strand: Direct

Name: xerD [H]

Synonym: CPE1095

Alternate gene names: 18310077

Gene position: 1298199-1299215 (Clockwise)

Preceding gene: 18310076

Following gene: 18310078

Centisome position: 42.82

GC content: 27.14

Gene sequence:

>1017_bases
ATGGCTAGGATTTTAAAGAAGAATAAAAATGAGTTGTTAGATATATTGGAAGATTATATGACAGACTGTAAATACAGAGA
CCTTAGAAGGACAACAATTAGGGCATATGAACAAAGTTTAAGATTATTATTTAAGTTCTTAGAAGATGATTATAAGGTCA
TTTACGTAGAAGATGTTAAGGAAGAACATATAAGAAATTATATAGACTTTACTAAAGAACGTGGTAAATATAGCTATGTA
GCTAATGAAAATAATATTAACTCCAATGTACCACAAAATAGAGGAGACTTTGGTAAGAAAGTAAGTTTATGTACTTTAGA
CAATTATTTAGGAAATATTAAGATGTTTTTCACTTGGTGTAAGGACAATAAATTAATAAGTAAAGATCCATCATTTAAAA
TAAAAAGGATTAAATATAGTAGAAAAGCTAAGGCTGAAATAACAATAGATGAGTTTAATAAACTTCTAAAGAGTTTGGAT
TTAACATTATTCTCAGAGTATCGTGACTATATAGTAATACAACTTTTAATGGATACTGGAATGAGAGTTGGTGAATGTTT
AGAGCTTAGAGAAGAAGATATAGACATAAGAAATAAAACTATATTTATATCTGGAGAGATAGCTAAAGGTAGACGAGATA
GATATGTATTCTTTAGTAATACTATGCAAAGAATGTTACAAAAATGGCTTAATTACAAAGATAGATATGTAGAAAGTAAT
TATATTTTTGTTACTAACAGAGGTGGTAAATATCAAGTGCATTCATTTGAAAAACATATGCGTAATTACTTAAAGAAAGC
TAAAATCGATAAACAAATAACTCCACATACCTTAAGGAATAACTTTGCAAAAAGATTTCTAATGAGTGGAGGAGATATAT
ATACTTTATCAAGATTATTAGGGCATAGTGATATTCGTACAACTCAATCTGCATATTTAGATTTAACGACATCAGATATT
AGAAAAAATTACTTGAAGTTTTCTCCACTAGAAAATATGAAGAAGAAAAATTGGTAA

Upstream 100 bases:

>100_bases
ATAATATTGATGAAAAACCAATAAATAATTAAATTTATAGAGTTATAAAACACTTCTTGTTAATTAGTTTTTTGCTAATT
AATAGGAGGTGTTTTTTATT

Downstream 100 bases:

>100_bases
AAAAATAGTAGGCACTCACAATACCTACTATTTAAAAATTTGCATATCCTCACACAAAAAAAGGATAATACACTCTACTT
GATTAATATTATCTCAAAAA

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MARILKKNKNELLDILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVKEEHIRNYIDFTKERGKYSYV
ANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKLISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLD
LTLFSEYRDYIVIQLLMDTGMRVGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESN
YIFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQSAYLDLTTSDI
RKNYLKFSPLENMKKKNW

Sequences:

>Translated_338_residues
MARILKKNKNELLDILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVKEEHIRNYIDFTKERGKYSYV
ANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKLISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLD
LTLFSEYRDYIVIQLLMDTGMRVGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESN
YIFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQSAYLDLTTSDI
RKNYLKFSPLENMKKKNW
>Mature_337_residues
ARILKKNKNELLDILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVKEEHIRNYIDFTKERGKYSYVA
NENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKLISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLDL
TLFSEYRDYIVIQLLMDTGMRVGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESNY
IFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQSAYLDLTTSDIR
KNYLKFSPLENMKKKNW

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=212, Percent_Identity=24.0566037735849, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789261, Length=267, Percent_Identity=24.3445692883895, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40551; Mature: 40420

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARILKKNKNELLDILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVK
CCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
EEHIRNYIDFTKERGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWC
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEEEEE
KDNKLISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTG
CCCEEECCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MRVGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESN
CCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCHHHHEEECC
YIFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLL
EEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
GHSDIRTTQSAYLDLTTSDIRKNYLKFSPLENMKKKNW
CCCCCCCCHHHEEEEEHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
ARILKKNKNELLDILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVK
CCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
EEHIRNYIDFTKERGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWC
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEEEEE
KDNKLISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTG
CCCEEECCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MRVGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESN
CCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCHHHHEEECC
YIFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLL
EEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
GHSDIRTTQSAYLDLTTSDIRKNYLKFSPLENMKKKNW
CCCCCCCCHHHEEEEEHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA