Click here to switch to the map view.

The map label for this gene is yvrC [H]

Identifier: 18310023

GI number: 18310023

Start: 1242218

End: 1243135

Strand: Direct

Name: yvrC [H]

Synonym: CPE1041

Alternate gene names: 18310023

Gene position: 1242218-1243135 (Clockwise)

Preceding gene: 18310022

Following gene: 18310024

Centisome position: 40.98

GC content: 30.39

Gene sequence:

>918_bases
ATGAGAAACTTTAAAAAAGTAATTTCTTTAGTAATGATAACCATGATGGCATTACTTATGTTTACTGGATGTGGAAGTAA
AACAGTAACAATGAAAGATATGGAAGGAACTGAATTTACAGTACCTAAAAAGATTGAAAGAATAATATCAACAGCTCCAT
CTAATACAGAGATATTAGTAGGTTTAGGACTAGGTGATAAAATAGTTGGTGTTGATAAATATTCGGCAGATGTAAAAGGA
TTAAATCCTGATATTCCTAAAATAGACTTTAGAAATCCAGATGCAGAGACTATAGTAGCTCTTAAGCCAGATGTAATAAT
AGCTTCAGGGCACAATAGAACAGGAAAAGAAGATCCATTTAAGGCTTTAAAGGATGCAGGAATACCTGTAGTTTATATTC
CAACTAGTGATAGTATAGATGGAATATATGAAGATATCAATTTCTTAGCTAAGTTAACTGGAACAGAAGCTGAAGGAAAG
AAAATGGTTGATTCAATGAAAAGTGAAGTAGATAAAATAAAAGCTATAGGTGAAACTATAAAAGATAAGAAAACTGTTTA
CTTTGAAATTGGATCAGGTTCAAAACTTTATAGCTTTGGAAGTGATACTTTCTTAAATAACTTATTAACTATAATTGGAG
CAGAAAACATATTTGGTAATGAAAAAGGTTGGATTTCTCCAAGTGAAGAAGCTGTTATAAAAGCAAACCCAGATGTAATT
TTAACAAATGAAAGTTATATTGAAAATGCTACAGATTTAATTGCTAAACGTCCAGGTTGGAATACAATAACTGCTGTTAA
GGATAATAAAATATTCTTAGTAGACAATAATGCATCATCACGTGGAAGTCAATACGTGGTAAATGTATTAAAACAAATGG
CAAAGGATATTTATCCAGAACAATATGCAGGAATCTAA

Upstream 100 bases:

>100_bases
AGCAATATTAAAAAAATACATATTAAAATCATTAAATAAAATCAAATAGGAATCCTTCATATAACTTAAGAATTTATAAA
GGTGAAAGTGGAGGAAGAAT

Downstream 100 bases:

>100_bases
AAAAAGAAAACTACTAATATTACTAGCTATTCCATTAGTAATATTAGTACTCTGTATTGGAACTTCCATAGGAAGTTCCA
ATATTAATATATGGGATACT

Product: iron ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MRNFKKVISLVMITMMALLMFTGCGSKTVTMKDMEGTEFTVPKKIERIISTAPSNTEILVGLGLGDKIVGVDKYSADVKG
LNPDIPKIDFRNPDAETIVALKPDVIIASGHNRTGKEDPFKALKDAGIPVVYIPTSDSIDGIYEDINFLAKLTGTEAEGK
KMVDSMKSEVDKIKAIGETIKDKKTVYFEIGSGSKLYSFGSDTFLNNLLTIIGAENIFGNEKGWISPSEEAVIKANPDVI
LTNESYIENATDLIAKRPGWNTITAVKDNKIFLVDNNASSRGSQYVVNVLKQMAKDIYPEQYAGI

Sequences:

>Translated_305_residues
MRNFKKVISLVMITMMALLMFTGCGSKTVTMKDMEGTEFTVPKKIERIISTAPSNTEILVGLGLGDKIVGVDKYSADVKG
LNPDIPKIDFRNPDAETIVALKPDVIIASGHNRTGKEDPFKALKDAGIPVVYIPTSDSIDGIYEDINFLAKLTGTEAEGK
KMVDSMKSEVDKIKAIGETIKDKKTVYFEIGSGSKLYSFGSDTFLNNLLTIIGAENIFGNEKGWISPSEEAVIKANPDVI
LTNESYIENATDLIAKRPGWNTITAVKDNKIFLVDNNASSRGSQYVVNVLKQMAKDIYPEQYAGI
>Mature_305_residues
MRNFKKVISLVMITMMALLMFTGCGSKTVTMKDMEGTEFTVPKKIERIISTAPSNTEILVGLGLGDKIVGVDKYSADVKG
LNPDIPKIDFRNPDAETIVALKPDVIIASGHNRTGKEDPFKALKDAGIPVVYIPTSDSIDGIYEDINFLAKLTGTEAEGK
KMVDSMKSEVDKIKAIGETIKDKKTVYFEIGSGSKLYSFGSDTFLNNLLTIIGAENIFGNEKGWISPSEEAVIKANPDVI
LTNESYIENATDLIAKRPGWNTITAVKDNKIFLVDNNASSRGSQYVVNVLKQMAKDIYPEQYAGI

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=201, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33348; Mature: 33348

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00336 BETA_LACTAMASE_C ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNFKKVISLVMITMMALLMFTGCGSKTVTMKDMEGTEFTVPKKIERIISTAPSNTEILV
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEECHHHHHHHHHCCCCCCEEEE
GLGLGDKIVGVDKYSADVKGLNPDIPKIDFRNPDAETIVALKPDVIIASGHNRTGKEDPF
EECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCHH
KALKDAGIPVVYIPTSDSIDGIYEDINFLAKLTGTEAEGKKMVDSMKSEVDKIKAIGETI
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KDKKTVYFEIGSGSKLYSFGSDTFLNNLLTIIGAENIFGNEKGWISPSEEAVIKANPDVI
CCCCEEEEEECCCCEEEECCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCEE
LTNESYIENATDLIAKRPGWNTITAVKDNKIFLVDNNASSRGSQYVVNVLKQMAKDIYPE
EECHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCH
QYAGI
HHCCC
>Mature Secondary Structure
MRNFKKVISLVMITMMALLMFTGCGSKTVTMKDMEGTEFTVPKKIERIISTAPSNTEILV
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEECHHHHHHHHHCCCCCCEEEE
GLGLGDKIVGVDKYSADVKGLNPDIPKIDFRNPDAETIVALKPDVIIASGHNRTGKEDPF
EECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCHH
KALKDAGIPVVYIPTSDSIDGIYEDINFLAKLTGTEAEGKKMVDSMKSEVDKIKAIGETI
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KDKKTVYFEIGSGSKLYSFGSDTFLNNLLTIIGAENIFGNEKGWISPSEEAVIKANPDVI
CCCCEEEEEECCCCEEEECCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEECCCCEE
LTNESYIENATDLIAKRPGWNTITAVKDNKIFLVDNNASSRGSQYVVNVLKQMAKDIYPE
EECHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCH
QYAGI
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]