Click here to switch to the map view.

The map label for this gene is ycdT [C]

Identifier: 18309989

GI number: 18309989

Start: 1212047

End: 1212634

Strand: Direct

Name: ycdT [C]

Synonym: CPE1007

Alternate gene names: 18309989

Gene position: 1212047-1212634 (Clockwise)

Preceding gene: 18309988

Following gene: 18309990

Centisome position: 39.98

GC content: 21.26

Gene sequence:

>588_bases
ATGAATAAAGTATTAAAGGGGAATTTAATTTTTTTAAGTTTTATATTGTTAGTAACATTAATTTTTATAGAAAGATATAA
TGGTGAAAATATTCTTTTAATTTTAAGTTTGATTTTTTATCTTGAAATAATATTTATAACAAGGGAATTTCTTAAATACA
TAAATTTAGGTCAAGCTATAAAAAATAGGAGTATTTTTAGTAGAGAACACAAGAATAAAAATAAATTTATTAATAAAGTT
TTGTTAGAGGAGAAATTAGACCCTCTAAGCAATGTATTTACTAGATTTGAATTTAAAAATAATCTTGAAATGTGGAAAGG
AGAATATACACTTTTCCTAATTGATTTAAGAAAATTTAGTTTAATAAATGATGCTTTAGGCAGAGGTAAAGGAGATGAAG
TTTTAAGGGAGTTTGGTAATGGATTAAATAATATATCAAAAAGCTTAGCTTCTAAAAATTTATATGGTGTATATGGAGGA
GAAGAATTTTTAGTTGCAATTAATAGTAAAAATAAAGAAGATATAATAGAAGTTTTAAATAAGCTAGATAATTTGAAAAA
AATAAGATTAAATAGCCTTAATAAATAA

Upstream 100 bases:

>100_bases
CAAAATATCTAATCTAATATATATGATTTAGAGTATATTAGATGTATTTATGGTACAGTCCTTTTTATATTAAAATAATT
TGTTTGATAAGGATTTATAT

Downstream 100 bases:

>100_bases
ATTAAAATGGAATTTAATATAGGATATTCTATAAATTTAGGAAATAAGAGTTTTGAGGAAATAATTGAAGAAGTGTTTTT
TGCTAAGGAAAGAGCTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MNKVLKGNLIFLSFILLVTLIFIERYNGENILLILSLIFYLEIIFITREFLKYINLGQAIKNRSIFSREHKNKNKFINKV
LLEEKLDPLSNVFTRFEFKNNLEMWKGEYTLFLIDLRKFSLINDALGRGKGDEVLREFGNGLNNISKSLASKNLYGVYGG
EEFLVAINSKNKEDIIEVLNKLDNLKKIRLNSLNK

Sequences:

>Translated_195_residues
MNKVLKGNLIFLSFILLVTLIFIERYNGENILLILSLIFYLEIIFITREFLKYINLGQAIKNRSIFSREHKNKNKFINKV
LLEEKLDPLSNVFTRFEFKNNLEMWKGEYTLFLIDLRKFSLINDALGRGKGDEVLREFGNGLNNISKSLASKNLYGVYGG
EEFLVAINSKNKEDIIEVLNKLDNLKKIRLNSLNK
>Mature_195_residues
MNKVLKGNLIFLSFILLVTLIFIERYNGENILLILSLIFYLEIIFITREFLKYINLGQAIKNRSIFSREHKNKNKFINKV
LLEEKLDPLSNVFTRFEFKNNLEMWKGEYTLFLIDLRKFSLINDALGRGKGDEVLREFGNGLNNISKSLASKNLYGVYGG
EEFLVAINSKNKEDIIEVLNKLDNLKKIRLNSLNK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22729; Mature: 22729

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVLKGNLIFLSFILLVTLIFIERYNGENILLILSLIFYLEIIFITREFLKYINLGQAI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNRSIFSREHKNKNKFINKVLLEEKLDPLSNVFTRFEFKNNLEMWKGEYTLFLIDLRKFS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCEEEEEEEHHHHH
LINDALGRGKGDEVLREFGNGLNNISKSLASKNLYGVYGGEEFLVAINSKNKEDIIEVLN
HHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEECCCEEEEEECCCCHHHHHHHHH
KLDNLKKIRLNSLNK
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MNKVLKGNLIFLSFILLVTLIFIERYNGENILLILSLIFYLEIIFITREFLKYINLGQAI
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNRSIFSREHKNKNKFINKVLLEEKLDPLSNVFTRFEFKNNLEMWKGEYTLFLIDLRKFS
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCEEEEEEEHHHHH
LINDALGRGKGDEVLREFGNGLNNISKSLASKNLYGVYGGEEFLVAINSKNKEDIIEVLN
HHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEECCCEEEEEECCCCHHHHHHHHH
KLDNLKKIRLNSLNK
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA