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The map label for this gene is yddU [C]

Identifier: 18309990

GI number: 18309990

Start: 1212707

End: 1213570

Strand: Direct

Name: yddU [C]

Synonym: CPE1008

Alternate gene names: 18309990

Gene position: 1212707-1213570 (Clockwise)

Preceding gene: 18309989

Following gene: 18309991

Centisome position: 40.0

GC content: 24.88

Gene sequence:

>864_bases
GTGTTTTTTGCTAAGGAAAGAGCTAAAAAAGAAGATTTTATATATGCTATAGAATATACGGAAGAACTAAGGAGTATAAG
AAAAAAGAATAATTTAATAATAAGAGATATTAAAGATGCATTAATAAATAAAAAGTTATATACGGTTTATCAACCTCAAA
TATCATCCTTAGATGATAAAATAAAAGGTTATGAGACTCTTATACGATGGAATCATGAAACTCTAGGCTCTATATCAGCT
AGTGATATAGTTAAAACCTTAGAAGAAATAGATGCTATTAAGGATTTAGATTTATATGTTTTTGAATCAACCTGTGAATT
TCAAAGTAGGTTAATTCAAAATAATATTGAGTTACAATGTTCAGTTAACATATCAATAAACACATTAAAACATAGAGGGG
TAGGATCTAATCTTTATAAGATAAGTAAAAATTATAACCTTAAACCAGAAAATATTACCTTAGAGATTTTAGAGAATGCT
GATTTAGAGGTTAGAGGAAATGCTATAAATGAAATTATTAAGCTTAAAAAATATGGATTTAAAATATCTATAGATGATTT
TGGAAAAGGGTATTCATCTATAAATAGAGTATTAAAGATACCTTTTGATCAAATAAAAATACCAAAGGACTTTATATCAG
ATATACCTAATAGTAAATATATAGCCATAATAAATTCAATTTCAAATTTTGCTAAGACTTTAGGGGCTGAACTTGTTATT
GAAGGTGTTGAAAGCAAAGAATACTATGATTTTTTTAAGTTATTAGATTTTGATGTTATTCAGGGTTTTTATTTTTCAAA
AGCATTAAATGAAAAAGAATTCTTAGAATATGTAAATAATTTAGGTGTAAGTGTGTCAATATAG

Upstream 100 bases:

>100_bases
AATAAGATTAAATAGCCTTAATAAATAAATTAAAATGGAATTTAATATAGGATATTCTATAAATTTAGGAAATAAGAGTT
TTGAGGAAATAATTGAAGAA

Downstream 100 bases:

>100_bases
GATTATTTAAATTTATAAAAGTTAATTTATTGTTTAATTTAAGTTATTATTTCAATATGTTCTTATTTAGGATATAATTA
ATTGTGTAAATGTTTAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MFFAKERAKKEDFIYAIEYTEELRSIRKKNNLIIRDIKDALINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISA
SDIVKTLEEIDAIKDLDLYVFESTCEFQSRLIQNNIELQCSVNISINTLKHRGVGSNLYKISKNYNLKPENITLEILENA
DLEVRGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISDIPNSKYIAIINSISNFAKTLGAELVI
EGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEFLEYVNNLGVSVSI

Sequences:

>Translated_287_residues
MFFAKERAKKEDFIYAIEYTEELRSIRKKNNLIIRDIKDALINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISA
SDIVKTLEEIDAIKDLDLYVFESTCEFQSRLIQNNIELQCSVNISINTLKHRGVGSNLYKISKNYNLKPENITLEILENA
DLEVRGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISDIPNSKYIAIINSISNFAKTLGAELVI
EGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEFLEYVNNLGVSVSI
>Mature_287_residues
MFFAKERAKKEDFIYAIEYTEELRSIRKKNNLIIRDIKDALINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISA
SDIVKTLEEIDAIKDLDLYVFESTCEFQSRLIQNNIELQCSVNISINTLKHRGVGSNLYKISKNYNLKPENITLEILENA
DLEVRGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISDIPNSKYIAIINSISNFAKTLGAELVI
EGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEFLEYVNNLGVSVSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=247, Percent_Identity=28.7449392712551, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI226510982, Length=249, Percent_Identity=26.1044176706827, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=25.4032258064516, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787541, Length=245, Percent_Identity=27.7551020408163, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87081743, Length=260, Percent_Identity=26.5384615384615, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788502, Length=261, Percent_Identity=25.2873563218391, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082096, Length=268, Percent_Identity=26.1194029850746, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=24.4725738396624, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=28.1632653061224, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786507, Length=249, Percent_Identity=23.6947791164659, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788849, Length=257, Percent_Identity=25.2918287937743, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 33140; Mature: 33140

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFAKERAKKEDFIYAIEYTEELRSIRKKNNLIIRDIKDALINKKLYTVYQPQISSLDDK
CCCCHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEEEHHHHHHCCHHEEEECCCHHHHHHH
IKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDLDLYVFESTCEFQSRLIQNNIELQC
HHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHCCCEEEE
SVNISINTLKHRGVGSNLYKISKNYNLKPENITLEILENADLEVRGNAINEIIKLKKYGF
EEEEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHCCC
KISIDDFGKGYSSINRVLKIPFDQIKIPKDFISDIPNSKYIAIINSISNFAKTLGAELVI
EEEEHHHCCCHHHHHHHHCCCHHHEECCHHHHHHCCCCCEEEEHHHHHHHHHHHCHHHEE
EGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEFLEYVNNLGVSVSI
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEC
>Mature Secondary Structure
MFFAKERAKKEDFIYAIEYTEELRSIRKKNNLIIRDIKDALINKKLYTVYQPQISSLDDK
CCCCHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEEEHHHHHHCCHHEEEECCCHHHHHHH
IKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDLDLYVFESTCEFQSRLIQNNIELQC
HHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHCCCEEEE
SVNISINTLKHRGVGSNLYKISKNYNLKPENITLEILENADLEVRGNAINEIIKLKKYGF
EEEEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHCCC
KISIDDFGKGYSSINRVLKIPFDQIKIPKDFISDIPNSKYIAIINSISNFAKTLGAELVI
EEEEHHHCCCHHHHHHHHCCCHHHEECCHHHHHHCCCCCEEEEHHHHHHHHHHHCHHHEE
EGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEFLEYVNNLGVSVSI
ECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]