| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is gltX [H]
Identifier: 18309980
GI number: 18309980
Start: 1202355
End: 1203995
Strand: Direct
Name: gltX [H]
Synonym: CPE0998
Alternate gene names: 18309980
Gene position: 1202355-1203995 (Clockwise)
Preceding gene: 18309979
Following gene: 18309981
Centisome position: 39.66
GC content: 31.08
Gene sequence:
>1641_bases ATGAGTTATGAAAATTTAGCTAATTTAATATTCCCAAACATAGATAAAACACCGGAATATTATTTTGAAAAGTATCCAAA GAGAGATTTAAAAGAAGGGGCTAAAGTATTAAGATATGCACCAAGTCCAACTGGATTTCAACATATAGGAGGAGTTTTTG CTTCATTAATAAATGAAAGATTAGCTCACCAAAGTGGTGGAATATTCTACTTAAGAATAGAAGATACTGATCAAAAGAGA GAAGTTGAAGGTGCTATAGATGATACTATAAAAACTATGCATAACTTTGGAATGGATTTTGATGAAGGAATAACTGGTGA AAACTCAGAAAAAGGAGCTTATGCACCATATAAACAAAGTCAAAGAGCTGATATATACAGAGCTTTTGTTAAGGATCTTT TAAGAAAGGGATTAGCTTATCCATGCTTTATGACTTCTGAAGAATTAGAAGCTTTAAGAGAAAAACAAATTGCAGAAAAA TTAACTCCAGGATGTTATGGAGAGTTTGCTAAATATAGAGATTTATCACCAGAAGAGGCTATAAAGAGAATTGAAGCTGG TGAAAGTTATGTTATAAGAATGAAGTCACCTGGAAATCCTGAAAAGAGAGTTGTTGCTCATGACATGATAAAAGGAGAGG TTTCATTCCCAGAAAATCTTCAAGATGTAGTAATAATAAAAGGTGATGGTCTTCCAACTTATCACTTTGCTCATGCAATA GATGATACATTAATGAGAACTACTCATGTTATAAGAGGAGAAGAATGGTTATCATCACTTCCAATACATCTTCAAATGTT TGAAGTTTTAGGAGTAGAAGCACCTAAATATGCTCATATTCCAACAATAATGAAAATGGATGGAAGTTCAAAAAGAAAAT TATCAAAGAGAAAAGATCCAGAAAGTGCAGTAAGTTATTACAGTGAAAAAGGATATCCATCTCAATCAGTTATTGAATAT CTTTTAAATATAATAAACTCAGCTTTCGAAGAGTGGAGAGCAGAAAATCCAGATGCTGATTATCATGATTACAAAGTTGA ACTAGATAAAATGAGTAAGAGTGGAGCTTTATTTGATTTAGTTAAATTAAATGATGTAAGTAAAGATGTTATCTGTAAAA TGAAACCAGAAGTTGTTTATGATTTATATACAAACTGGGCTAAAGAGTATGATAAAGAAATGTATGATTTAGTTACTTCT AAAGAAGCTATGATGAAAGAAGTATTCAATATAGATAAAGAAGGTCCAAAGCCAAGAAAAGACTTTGCTAAATGGGATGA AGTTAGAGAAAAAATATTCTACTTCTTTGATGAGTTATTTGATAAGGAAACAGCTAATGATGTTGAATTACCAAAAACTT TAGAATTAGAAGAAGCTAAGAGAATAATAGAAGCTTACGAAAAAGCATATAACTTTAATACAGATAAGGATACTTGGTTC TCAGATTTAAAAGAAGTTGCTGTAGAATTAGGATATGCTACTGATAGAAAGAAATATAAAAAGAACCCAGAAGAATACAA AGGAATGGTTTCTGATGTTGCAGGAGCTGTAAGAGCAGCTTTAACTCACAGAGCTAATACTCCAGACCTTTATACAATAA TGCAAATTATGGGAGAAGAAGCAGTAAGAGAAAGAATTTAA
Upstream 100 bases:
>100_bases AACTAATTTAGGTGGTAACGCGGAAGTTAAGTCTTTCGTCCTAATTTTTAGGACGAGGGACTTTTTTTATTACATAAATT TAGAAAGGAAAGTGAAAAGA
Downstream 100 bases:
>100_bases AAAATTCTTAGCTCTATAATTTGATTTTAAGAAGTTTTAACACAATGATAATAAAAAGCTTGCAATGTTAATTTTTTAGT GGTATAATTAGAACATAACA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 546; Mature: 545
Protein sequence:
>546_residues MSYENLANLIFPNIDKTPEYYFEKYPKRDLKEGAKVLRYAPSPTGFQHIGGVFASLINERLAHQSGGIFYLRIEDTDQKR EVEGAIDDTIKTMHNFGMDFDEGITGENSEKGAYAPYKQSQRADIYRAFVKDLLRKGLAYPCFMTSEELEALREKQIAEK LTPGCYGEFAKYRDLSPEEAIKRIEAGESYVIRMKSPGNPEKRVVAHDMIKGEVSFPENLQDVVIIKGDGLPTYHFAHAI DDTLMRTTHVIRGEEWLSSLPIHLQMFEVLGVEAPKYAHIPTIMKMDGSSKRKLSKRKDPESAVSYYSEKGYPSQSVIEY LLNIINSAFEEWRAENPDADYHDYKVELDKMSKSGALFDLVKLNDVSKDVICKMKPEVVYDLYTNWAKEYDKEMYDLVTS KEAMMKEVFNIDKEGPKPRKDFAKWDEVREKIFYFFDELFDKETANDVELPKTLELEEAKRIIEAYEKAYNFNTDKDTWF SDLKEVAVELGYATDRKKYKKNPEEYKGMVSDVAGAVRAALTHRANTPDLYTIMQIMGEEAVRERI
Sequences:
>Translated_546_residues MSYENLANLIFPNIDKTPEYYFEKYPKRDLKEGAKVLRYAPSPTGFQHIGGVFASLINERLAHQSGGIFYLRIEDTDQKR EVEGAIDDTIKTMHNFGMDFDEGITGENSEKGAYAPYKQSQRADIYRAFVKDLLRKGLAYPCFMTSEELEALREKQIAEK LTPGCYGEFAKYRDLSPEEAIKRIEAGESYVIRMKSPGNPEKRVVAHDMIKGEVSFPENLQDVVIIKGDGLPTYHFAHAI DDTLMRTTHVIRGEEWLSSLPIHLQMFEVLGVEAPKYAHIPTIMKMDGSSKRKLSKRKDPESAVSYYSEKGYPSQSVIEY LLNIINSAFEEWRAENPDADYHDYKVELDKMSKSGALFDLVKLNDVSKDVICKMKPEVVYDLYTNWAKEYDKEMYDLVTS KEAMMKEVFNIDKEGPKPRKDFAKWDEVREKIFYFFDELFDKETANDVELPKTLELEEAKRIIEAYEKAYNFNTDKDTWF SDLKEVAVELGYATDRKKYKKNPEEYKGMVSDVAGAVRAALTHRANTPDLYTIMQIMGEEAVRERI >Mature_545_residues SYENLANLIFPNIDKTPEYYFEKYPKRDLKEGAKVLRYAPSPTGFQHIGGVFASLINERLAHQSGGIFYLRIEDTDQKRE VEGAIDDTIKTMHNFGMDFDEGITGENSEKGAYAPYKQSQRADIYRAFVKDLLRKGLAYPCFMTSEELEALREKQIAEKL TPGCYGEFAKYRDLSPEEAIKRIEAGESYVIRMKSPGNPEKRVVAHDMIKGEVSFPENLQDVVIIKGDGLPTYHFAHAID DTLMRTTHVIRGEEWLSSLPIHLQMFEVLGVEAPKYAHIPTIMKMDGSSKRKLSKRKDPESAVSYYSEKGYPSQSVIEYL LNIINSAFEEWRAENPDADYHDYKVELDKMSKSGALFDLVKLNDVSKDVICKMKPEVVYDLYTNWAKEYDKEMYDLVTSK EAMMKEVFNIDKEGPKPRKDFAKWDEVREKIFYFFDELFDKETANDVELPKTLELEEAKRIIEAYEKAYNFNTDKDTWFS DLKEVAVELGYATDRKKYKKNPEEYKGMVSDVAGAVRAALTHRANTPDLYTIMQIMGEEAVRERI
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=530, Percent_Identity=27.9245283018868, Blast_Score=179, Evalue=7e-45, Organism=Escherichia coli, GI1788743, Length=515, Percent_Identity=28.3495145631068, Blast_Score=172, Evalue=7e-44, Organism=Escherichia coli, GI226510925, Length=332, Percent_Identity=25, Blast_Score=100, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71993394, Length=298, Percent_Identity=39.9328859060403, Blast_Score=186, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6324540, Length=462, Percent_Identity=30.0865800865801, Blast_Score=184, Evalue=4e-47, Organism=Saccharomyces cerevisiae, GI6324742, Length=244, Percent_Identity=26.6393442622951, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24665321, Length=289, Percent_Identity=38.0622837370242, Blast_Score=190, Evalue=2e-48,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 62999; Mature: 62868
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYENLANLIFPNIDKTPEYYFEKYPKRDLKEGAKVLRYAPSPTGFQHIGGVFASLINER CCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LAHQSGGIFYLRIEDTDQKREVEGAIDDTIKTMHNFGMDFDEGITGENSEKGAYAPYKQS HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC QRADIYRAFVKDLLRKGLAYPCFMTSEELEALREKQIAEKLTPGCYGEFAKYRDLSPEEA HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH IKRIEAGESYVIRMKSPGNPEKRVVAHDMIKGEVSFPENLQDVVIIKGDGLPTYHFAHAI HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHH DDTLMRTTHVIRGEEWLSSLPIHLQMFEVLGVEAPKYAHIPTIMKMDGSSKRKLSKRKDP HHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHCCCH ESAVSYYSEKGYPSQSVIEYLLNIINSAFEEWRAENPDADYHDYKVELDKMSKSGALFDL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHCCCCCEEEE VKLNDVSKDVICKMKPEVVYDLYTNWAKEYDKEMYDLVTSKEAMMKEVFNIDKEGPKPRK HHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH DFAKWDEVREKIFYFFDELFDKETANDVELPKTLELEEAKRIIEAYEKAYNFNTDKDTWF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH SDLKEVAVELGYATDRKKYKKNPEEYKGMVSDVAGAVRAALTHRANTPDLYTIMQIMGEE HHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AVRERI HHHHCC >Mature Secondary Structure SYENLANLIFPNIDKTPEYYFEKYPKRDLKEGAKVLRYAPSPTGFQHIGGVFASLINER CHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LAHQSGGIFYLRIEDTDQKREVEGAIDDTIKTMHNFGMDFDEGITGENSEKGAYAPYKQS HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC QRADIYRAFVKDLLRKGLAYPCFMTSEELEALREKQIAEKLTPGCYGEFAKYRDLSPEEA HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH IKRIEAGESYVIRMKSPGNPEKRVVAHDMIKGEVSFPENLQDVVIIKGDGLPTYHFAHAI HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHH DDTLMRTTHVIRGEEWLSSLPIHLQMFEVLGVEAPKYAHIPTIMKMDGSSKRKLSKRKDP HHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHCCCH ESAVSYYSEKGYPSQSVIEYLLNIINSAFEEWRAENPDADYHDYKVELDKMSKSGALFDL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHCCCCCEEEE VKLNDVSKDVICKMKPEVVYDLYTNWAKEYDKEMYDLVTSKEAMMKEVFNIDKEGPKPRK HHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH DFAKWDEVREKIFYFFDELFDKETANDVELPKTLELEEAKRIIEAYEKAYNFNTDKDTWF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH SDLKEVAVELGYATDRKKYKKNPEEYKGMVSDVAGAVRAALTHRANTPDLYTIMQIMGEE HHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AVRERI HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA