Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18309944

Identifier: 18309944

GI number: 18309944

Start: 1158113

End: 1159072

Strand: Direct

Name: 18309944

Synonym: CPE0962

Alternate gene names: NA

Gene position: 1158113-1159072 (Clockwise)

Preceding gene: 18309943

Following gene: 18309946

Centisome position: 38.2

GC content: 26.35

Gene sequence:

>960_bases
ATGAAATATAAAAGATATTTTATATCACTTGTACTTATTTTAGCTATGGTAAGTATTGCAGAAATTACAGGGGAAAGAGA
GATAATATTTCCAGAGGTGGCCGCTTTAGTTGTTGGATCTTGGGTTTTAGAAAAGCAACCTTGGAAGGTTAGTAAATTAG
GATTAGTATGTCTTATGACACTATGTTCTATAGTAGGGGTACTTATTGTAAGATATGTTAACTTAGGATTAACTATTGAA
GTTTTAATAGGATTAGTTTTTACTGGGCTTATATTAAAGCTATCAAAAACAACTCTTGTGCCAATTATTTCAGCTTGTAT
TTTACCTATTGTACTTAGAACTGAGACTTGGGTTTATCCAATATCAGTATTTATACTTACTATACTTATAGTTTCAATTA
AGTATTTTATAGAAGATTATGGAGTAAGTGAAGAGGTAAGAGAAGAACTTAAAGAAGAAATTACTAAACTTGAAAGAAAT
ACTTCACTTAGAAAAAAAGAATTTATTAGATTATTGAAGATATTTATTACTGTAGGTATATTAACATATTTTTCTGTTAA
ATTTAATATTACTTTATTAATAGCACCACCTTTAATAGTTGCTTTTATAGAACTTACAAATGAACATTGTAAGTTTAGGC
AGCGTTCAAAAAGTTTATTATTCTTGTTTATTGTTGTAGCTATTTTAGGATTTATATTTAGAATTGGATTTAACGAATAT
TTAGGACTGCCTTTATGGCTTTGTACTATTTTTCTATTAATTAGTTTATTTATATGTCTTGAAATATTTAATATGTATTT
TCCACCAGTTGCAGCAATTGCTGTTTTACCAATGCTATTAACTAGTAAACAAGTAATGTTTTATCCATTTCAAATTGCTA
TAGGATGCCTTATATTTATAACTATTGCTATGATTTTTTTTAAAGAAGAAAAATGTATTGTTGACACTTTTAAGAATTAA

Upstream 100 bases:

>100_bases
AATGTTTAAAAGTAGTATAGAGATAGTTGTCTTATTTTTAACAAAATACTTTTGGTATGATAAAATTAATCTGAAATTTT
TAAACAAAGGATGTCATAAT

Downstream 100 bases:

>100_bases
AATAAATTTATTGAAAAAATAATTGGCCATAGAAATTTATGACCAATTATTTTTTTAGGAATTTTTATTATTATAGTTAA
CTTTAAAGTATAGTCCTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKYKRYFISLVLILAMVSIAEITGEREIIFPEVAALVVGSWVLEKQPWKVSKLGLVCLMTLCSIVGVLIVRYVNLGLTIE
VLIGLVFTGLILKLSKTTLVPIISACILPIVLRTETWVYPISVFILTILIVSIKYFIEDYGVSEEVREELKEEITKLERN
TSLRKKEFIRLLKIFITVGILTYFSVKFNITLLIAPPLIVAFIELTNEHCKFRQRSKSLLFLFIVVAILGFIFRIGFNEY
LGLPLWLCTIFLLISLFICLEIFNMYFPPVAAIAVLPMLLTSKQVMFYPFQIAIGCLIFITIAMIFFKEEKCIVDTFKN

Sequences:

>Translated_319_residues
MKYKRYFISLVLILAMVSIAEITGEREIIFPEVAALVVGSWVLEKQPWKVSKLGLVCLMTLCSIVGVLIVRYVNLGLTIE
VLIGLVFTGLILKLSKTTLVPIISACILPIVLRTETWVYPISVFILTILIVSIKYFIEDYGVSEEVREELKEEITKLERN
TSLRKKEFIRLLKIFITVGILTYFSVKFNITLLIAPPLIVAFIELTNEHCKFRQRSKSLLFLFIVVAILGFIFRIGFNEY
LGLPLWLCTIFLLISLFICLEIFNMYFPPVAAIAVLPMLLTSKQVMFYPFQIAIGCLIFITIAMIFFKEEKCIVDTFKN
>Mature_319_residues
MKYKRYFISLVLILAMVSIAEITGEREIIFPEVAALVVGSWVLEKQPWKVSKLGLVCLMTLCSIVGVLIVRYVNLGLTIE
VLIGLVFTGLILKLSKTTLVPIISACILPIVLRTETWVYPISVFILTILIVSIKYFIEDYGVSEEVREELKEEITKLERN
TSLRKKEFIRLLKIFITVGILTYFSVKFNITLLIAPPLIVAFIELTNEHCKFRQRSKSLLFLFIVVAILGFIFRIGFNEY
LGLPLWLCTIFLLISLFICLEIFNMYFPPVAAIAVLPMLLTSKQVMFYPFQIAIGCLIFITIAMIFFKEEKCIVDTFKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36522; Mature: 36522

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKRYFISLVLILAMVSIAEITGEREIIFPEVAALVVGSWVLEKQPWKVSKLGLVCLMT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LCSIVGVLIVRYVNLGLTIEVLIGLVFTGLILKLSKTTLVPIISACILPIVLRTETWVYP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ISVFILTILIVSIKYFIEDYGVSEEVREELKEEITKLERNTSLRKKEFIRLLKIFITVGI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LTYFSVKFNITLLIAPPLIVAFIELTNEHCKFRQRSKSLLFLFIVVAILGFIFRIGFNEY
HHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
LGLPLWLCTIFLLISLFICLEIFNMYFPPVAAIAVLPMLLTSKQVMFYPFQIAIGCLIFI
HCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TIAMIFFKEEKCIVDTFKN
HHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure
MKYKRYFISLVLILAMVSIAEITGEREIIFPEVAALVVGSWVLEKQPWKVSKLGLVCLMT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LCSIVGVLIVRYVNLGLTIEVLIGLVFTGLILKLSKTTLVPIISACILPIVLRTETWVYP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ISVFILTILIVSIKYFIEDYGVSEEVREELKEEITKLERNTSLRKKEFIRLLKIFITVGI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LTYFSVKFNITLLIAPPLIVAFIELTNEHCKFRQRSKSLLFLFIVVAILGFIFRIGFNEY
HHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
LGLPLWLCTIFLLISLFICLEIFNMYFPPVAAIAVLPMLLTSKQVMFYPFQIAIGCLIFI
HCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TIAMIFFKEEKCIVDTFKN
HHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA