Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18309888

Identifier: 18309888

GI number: 18309888

Start: 1107716

End: 1108474

Strand: Direct

Name: 18309888

Synonym: CPE0906

Alternate gene names: NA

Gene position: 1107716-1108474 (Clockwise)

Preceding gene: 18309887

Following gene: 18309889

Centisome position: 36.54

GC content: 29.64

Gene sequence:

>759_bases
ATGAAAGGGGGTAAGGATAATATGGACTATGAAAAGTTAGTTGAATTCTTAGTAGATGAAATATACAAAAGAATTCAAGA
GGAAAATAATAAAAGCAATTCTTTAGAAAAGAGAAAATCCATTGTTGTAATTGGAGAGAGTAATGTAAGTTTCTACAGAG
AAGCCTTAAAAGGATTTGATATTAATCCATTAACATCAGAATGCAAAGATTGCGACATACTACTTATATCAAAGCTTTGC
ATTAAGGGACTTAGCAACATAGCTCAAGGAACATGTACAACAAAGGCAGAAAATTTTGCTTTAGAAATGCTTTTAAAAGG
TAAGAAAGTTTATATTCTTGAGGATGGTATTGAGTATAGAAAATACAAAAATACGGCTCCAAAAGTTTTATACAATAAAT
ATATTAAGTTTGAGGAAGAGCTTCTAGCCTATGGCATAGAGGTTATAGATGATTTAAATAGGATTTCAATAGAAAGCAAG
GATGAAAAAGTTTCTCTTAGTGGAATTAAAGAAGAAATAAGTAAGAATCTTTGTTTATGCAGTGAAAATAAGGTTGAAGG
AAAAAAGGACTTAGACACTACTGCTATTGCAGATGAGTTCACAATAAATCTTTCAAATAAGAAATTAGTATCAGAAAGTG
ATCTAAGAAAGCCTCACATAAATGGAGTAAGAACCTTAATAGTTGATAAAAAAGCTATAATTACTCCCTTAGCAAAGGAT
TATATTCGCATAAATAATTTAAATGTTGTGCTTTCTTAG

Upstream 100 bases:

>100_bases
TATATTAAGCTTTTGTAAAGGATTATATAGTTTAACTACATAAAATCTTATAAGCATTTAAATAAGATTTTAGCTAATGT
AAATAAGAGTAAGCCTCTAA

Downstream 100 bases:

>100_bases
AGTAGCTTAACTCTTTAAAATATGGATGATTTTTGTTTATGAAGCTAATTAAACTTAAGAATCATCCATATTTAAAATAA
ACAACCTTTAAAAAAGGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Ethanolamine Utilization Protein

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKGGKDNMDYEKLVEFLVDEIYKRIQEENNKSNSLEKRKSIVVIGESNVSFYREALKGFDINPLTSECKDCDILLISKLC
IKGLSNIAQGTCTTKAENFALEMLLKGKKVYILEDGIEYRKYKNTAPKVLYNKYIKFEEELLAYGIEVIDDLNRISIESK
DEKVSLSGIKEEISKNLCLCSENKVEGKKDLDTTAIADEFTINLSNKKLVSESDLRKPHINGVRTLIVDKKAIITPLAKD
YIRINNLNVVLS

Sequences:

>Translated_252_residues
MKGGKDNMDYEKLVEFLVDEIYKRIQEENNKSNSLEKRKSIVVIGESNVSFYREALKGFDINPLTSECKDCDILLISKLC
IKGLSNIAQGTCTTKAENFALEMLLKGKKVYILEDGIEYRKYKNTAPKVLYNKYIKFEEELLAYGIEVIDDLNRISIESK
DEKVSLSGIKEEISKNLCLCSENKVEGKKDLDTTAIADEFTINLSNKKLVSESDLRKPHINGVRTLIVDKKAIITPLAKD
YIRINNLNVVLS
>Mature_252_residues
MKGGKDNMDYEKLVEFLVDEIYKRIQEENNKSNSLEKRKSIVVIGESNVSFYREALKGFDINPLTSECKDCDILLISKLC
IKGLSNIAQGTCTTKAENFALEMLLKGKKVYILEDGIEYRKYKNTAPKVLYNKYIKFEEELLAYGIEVIDDLNRISIESK
DEKVSLSGIKEEISKNLCLCSENKVEGKKDLDTTAIADEFTINLSNKKLVSESDLRKPHINGVRTLIVDKKAIITPLAKD
YIRINNLNVVLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28615; Mature: 28615

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGGKDNMDYEKLVEFLVDEIYKRIQEENNKSNSLEKRKSIVVIGESNVSFYREALKGFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCHHHHHHHHHCCC
INPLTSECKDCDILLISKLCIKGLSNIAQGTCTTKAENFALEMLLKGKKVYILEDGIEYR
CCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHH
KYKNTAPKVLYNKYIKFEEELLAYGIEVIDDLNRISIESKDEKVSLSGIKEEISKNLCLC
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCEEE
SENKVEGKKDLDTTAIADEFTINLSNKKLVSESDLRKPHINGVRTLIVDKKAIITPLAKD
CCCCCCCCCCCCHHHCCCEEEEEECCCEECCHHHCCCCCCCCCEEEEECCHHHHHHHHHH
YIRINNLNVVLS
HEEECCEEEEEC
>Mature Secondary Structure
MKGGKDNMDYEKLVEFLVDEIYKRIQEENNKSNSLEKRKSIVVIGESNVSFYREALKGFD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCHHHHHHHHHCCC
INPLTSECKDCDILLISKLCIKGLSNIAQGTCTTKAENFALEMLLKGKKVYILEDGIEYR
CCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHH
KYKNTAPKVLYNKYIKFEEELLAYGIEVIDDLNRISIESKDEKVSLSGIKEEISKNLCLC
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCEEE
SENKVEGKKDLDTTAIADEFTINLSNKKLVSESDLRKPHINGVRTLIVDKKAIITPLAKD
CCCCCCCCCCCCHHHCCCEEEEEECCCEECCHHHCCCCCCCCCEEEEECCHHHHHHHHHH
YIRINNLNVVLS
HEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA