| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is pduL
Identifier: 18309887
GI number: 18309887
Start: 1106875
End: 1107510
Strand: Direct
Name: pduL
Synonym: CPE0905
Alternate gene names: NA
Gene position: 1106875-1107510 (Clockwise)
Preceding gene: 18309886
Following gene: 18309888
Centisome position: 36.51
GC content: 33.65
Gene sequence:
>636_bases ATGGACAATCTATTACAGGACATTATAGAGGAAGTAGTCAGAAGAGTTAAGGATGAAGCTTTTATAGAAGTTGAAGCTTC AGGTAGACATGTTCATTTAACTAGGGAGCATATAGACATATTATTTGGAGAAGGACATGAGCTTACTAGAATAAAAGATT TATCTCAACCAGGTCAGTATGCTTGTAAAGAAAGAGTTACTATATCAGGGCCTAGAGGTAAGATAGATAATGTTGTGGTT TTAGGACCACCCAGAAATGAAACTCAAGTGGAAGTTTCATTTACAGATGCTCTAGTACTAGGATCTATACCTCCAGTTAA ATTAAGTGGAGATTTAGAGAATACTCCAGAAATAACAATTTCAACAGAGAGAGCTTCTATAGCCTTAAATAGAGGATTAA TGGTTGCTAAAAGACATATACACATGACACCAGAGGATGCAATAAAATTTGGTGTTAGTAACAATGAAAGCGTAAAAGTT AAGGTTTTAGGGAAAAGACCTTTAATATTTGATGATGTAATTGTAAGAGTTAGCAAAGATTACAGAACATTTATGCATAT TGATTATGATGAAGCAAATGCCTGCGGATTTTCAAAGGGAACTTTTGCCTTAATTGTTGGAAAAGATGAAAAATAA
Upstream 100 bases:
>100_bases GAGAGAAGATTTAATTAGAGCTTTAAATAGACTATCCTCAGTATTTTGGATTATGATCTTTAAAGTTAGAACAGGAAAGT ACGAGAAATAGGAGGAAGCT
Downstream 100 bases:
>100_bases TAATTTAAGATATTAAGCTTATACATTAAGTTAGAAGTTAATTATGCTTTAGAAAGCTTTATACTAATTTTATGATATAG AAGTTTAAAGAGTTTCTTAA
Product: propanediol utilization protein
Products: NA
Alternate protein names: Propanediol Utilization Protein PduL; Acetate Kinase; Ethanolamine Utilization Protein; PduL Protein; Transcriptional Regulator; Propanediol Utilization Protein Family; Propanediol/Ethanolamine Utilization Protein; Propanediol Utilization; Propanediol Utilization Protein-Like
Number of amino acids: Translated: 211; Mature: 211
Protein sequence:
>211_residues MDNLLQDIIEEVVRRVKDEAFIEVEASGRHVHLTREHIDILFGEGHELTRIKDLSQPGQYACKERVTISGPRGKIDNVVV LGPPRNETQVEVSFTDALVLGSIPPVKLSGDLENTPEITISTERASIALNRGLMVAKRHIHMTPEDAIKFGVSNNESVKV KVLGKRPLIFDDVIVRVSKDYRTFMHIDYDEANACGFSKGTFALIVGKDEK
Sequences:
>Translated_211_residues MDNLLQDIIEEVVRRVKDEAFIEVEASGRHVHLTREHIDILFGEGHELTRIKDLSQPGQYACKERVTISGPRGKIDNVVV LGPPRNETQVEVSFTDALVLGSIPPVKLSGDLENTPEITISTERASIALNRGLMVAKRHIHMTPEDAIKFGVSNNESVKV KVLGKRPLIFDDVIVRVSKDYRTFMHIDYDEANACGFSKGTFALIVGKDEK >Mature_211_residues MDNLLQDIIEEVVRRVKDEAFIEVEASGRHVHLTREHIDILFGEGHELTRIKDLSQPGQYACKERVTISGPRGKIDNVVV LGPPRNETQVEVSFTDALVLGSIPPVKLSGDLENTPEITISTERASIALNRGLMVAKRHIHMTPEDAIKFGVSNNESVKV KVLGKRPLIFDDVIVRVSKDYRTFMHIDYDEANACGFSKGTFALIVGKDEK
Specific function: Unknown
COG id: COG4869
COG function: function code Q; Propanediol utilization protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23530; Mature: 23530
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNLLQDIIEEVVRRVKDEAFIEVEASGRHVHLTREHIDILFGEGHELTRIKDLSQPGQY CCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHEEEEEECCCCCEEEECCCCCCCHH ACKERVTISGPRGKIDNVVVLGPPRNETQVEVSFTDALVLGSIPPVKLSGDLENTPEITI HHHCCEEEECCCCCCCCEEEECCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCEEE STERASIALNRGLMVAKRHIHMTPEDAIKFGVSNNESVKVKVLGKRPLIFDDVIVRVSKD EECCEEEEECCCEEEEEEEEECCHHHHEEECCCCCCEEEEEEECCCCCEEHHHHEEECCC YRTFMHIDYDEANACGFSKGTFALIVGKDEK CEEEEEEECCCCCCCCCCCCCEEEEEECCCC >Mature Secondary Structure MDNLLQDIIEEVVRRVKDEAFIEVEASGRHVHLTREHIDILFGEGHELTRIKDLSQPGQY CCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHEEEEEECCCCCEEEECCCCCCCHH ACKERVTISGPRGKIDNVVVLGPPRNETQVEVSFTDALVLGSIPPVKLSGDLENTPEITI HHHCCEEEECCCCCCCCEEEECCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCEEE STERASIALNRGLMVAKRHIHMTPEDAIKFGVSNNESVKVKVLGKRPLIFDDVIVRVSKD EECCEEEEECCCEEEEEEEEECCHHHHEEECCCCCCEEEEEEECCCCCEEHHHHEEECCC YRTFMHIDYDEANACGFSKGTFALIVGKDEK CEEEEEEECCCCCCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA