| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is bceR [H]
Identifier: 18309822
GI number: 18309822
Start: 1028688
End: 1029356
Strand: Direct
Name: bceR [H]
Synonym: CPE0840
Alternate gene names: 18309822
Gene position: 1028688-1029356 (Clockwise)
Preceding gene: 18309821
Following gene: 18309823
Centisome position: 33.93
GC content: 28.25
Gene sequence:
>669_bases ATGAAGAGAATTCTTATAATTGAAGACACAGATACCATAAGAGAAGAACTTACAAAACTTCTTACTAGATATGGTTATGA AGTTTTAGCTCCAACAGATTTTGAAAATATATTAGAGTATGTTAAAGAAAATAATTCAGATTTAATCCTATTAGATATAA ACTTACCTTATTTTGATGGATATCATATTTGTAGAGAAATAAGAAAAGATTCTAATGTGCCTATAATAATAGTTACAAGT AGAGATAGTGATATGGATGAAATTATGAGTATGAATTTAGGAGCTGATGATTTTATAACGAAGCCTTATAATACTCAAGT TTTATTAGCTAGAATAGCTTCACTACTTAGAAGAACCTATTCTTTATCAGAGCAAGAAGTTTTAACATATGGTGATTTAA AGCTTAATTTATCTAATGGAACAATTTCTTGCAGAGGAAAAGAAGAAGAGTTAACTAAAAATGAACTTAAGATATTATCA CATCTTTTAAAAAACAAAGGAAATGTTGTTTCAAGGGAAGATCTTATGGATTATATGTGGAACTCAGATATTTTTGTGGA TGATAACACACTTTCAGTAAATGTAACTAGACTTAGAAAAAAATTAGAAGAGGTTGGAGTAAAAGGCGCTATAGAAACTA GAAGGGGATTAGGGTATATTATGCCATGA
Upstream 100 bases:
>100_bases GACAATAAAATCGTAATACTTTAAGAAAGCTTAATATAGCTTTAAAATTTTATCTGTTAAGAATATTATAAAATTAATTA TAATGGAAGGACTGGTTAGT
Downstream 100 bases:
>100_bases AACTAAGGGATTACTTTGAGGATAAAACATTCTTTTTAATTGTAAACTTTATAATTTTTGCCACTATAGGAGTTTTATTG TTCATAGGCAATGTTGGTTC
Product: two-component response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MKRILIIEDTDTIREELTKLLTRYGYEVLAPTDFENILEYVKENNSDLILLDINLPYFDGYHICREIRKDSNVPIIIVTS RDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSLSEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILS HLLKNKGNVVSREDLMDYMWNSDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGYIMP
Sequences:
>Translated_222_residues MKRILIIEDTDTIREELTKLLTRYGYEVLAPTDFENILEYVKENNSDLILLDINLPYFDGYHICREIRKDSNVPIIIVTS RDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSLSEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILS HLLKNKGNVVSREDLMDYMWNSDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGYIMP >Mature_222_residues MKRILIIEDTDTIREELTKLLTRYGYEVLAPTDFENILEYVKENNSDLILLDINLPYFDGYHICREIRKDSNVPIIIVTS RDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSLSEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILS HLLKNKGNVVSREDLMDYMWNSDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGYIMP
Specific function: Member of the two-component regulatory system BceS/BceR involved in the regulation of bacitracin resistance. When activated by BceS, binds to the upstream region of the bceAB promoter and up-regulates the expression of these two genes [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=221, Percent_Identity=31.6742081447964, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1788394, Length=219, Percent_Identity=34.703196347032, Blast_Score=134, Evalue=5e-33, Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=32.5991189427313, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1790863, Length=225, Percent_Identity=32.8888888888889, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=30.1369863013699, Blast_Score=120, Evalue=7e-29, Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=31.3636363636364, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI87082012, Length=217, Percent_Identity=31.3364055299539, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1790552, Length=220, Percent_Identity=35.4545454545455, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=31.981981981982, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1786784, Length=220, Percent_Identity=31.8181818181818, Blast_Score=114, Evalue=4e-27, Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=31.5555555555556, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=31.8181818181818, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=30.1310043668122, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI145693140, Length=234, Percent_Identity=29.0598290598291, Blast_Score=91, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR016032 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 25605; Mature: 25605
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRILIIEDTDTIREELTKLLTRYGYEVLAPTDFENILEYVKENNSDLILLDINLPYFDG CCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCH YHICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTY HHHHHHHHCCCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SLSEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMW CCCCHHEEEECCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC NSDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGYIMP CCCEEEECCEEEEEHHHHHHHHHHCCCCCCHHHHCCCCCCCC >Mature Secondary Structure MKRILIIEDTDTIREELTKLLTRYGYEVLAPTDFENILEYVKENNSDLILLDINLPYFDG CCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCH YHICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTY HHHHHHHHCCCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SLSEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMW CCCCHHEEEECCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC NSDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGYIMP CCCEEEECCEEEEEHHHHHHHHHHCCCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]