| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is hisK [H]
Identifier: 18309786
GI number: 18309786
Start: 985945
End: 987819
Strand: Direct
Name: hisK [H]
Synonym: CPE0804
Alternate gene names: 18309786
Gene position: 985945-987819 (Clockwise)
Preceding gene: 18309785
Following gene: 18309787
Centisome position: 32.52
GC content: 26.51
Gene sequence:
>1875_bases ATGAAAAACTACTATTTAGAAGAGGTTGTGGATGAAATTTACTATAAAGAAGGCAAAGAAAATAGAGAATTAAAAATGGA TATCTTAAGTATTAAGATAGAAAATGAATTGAAGATTATAGAAAATTTATGTGGCAATTGTAAAAGAAAAAATACCCTAT ATGAGGCTATAAAGAATATAAAAAGCTTATTAAAACAATATTATATAGTTTTTAATGGAACTCAAGATGCATTATTTTTA GTTGAAATGCTTAAAGATGGAAATTTTAAATATGTAAGAAATAACAATGCATATCTTCATGAATTTGGACTTAAAGGAGA GGAGATTATAAATAAAACTCCAAAGGATGTGTTTGGGGAAGAGCTTGGGAAAAGATTCTGTAATTATTATAAAAATTGTA TAGAAGGTAAAAGAGTAGTTGTATTTGAAGATGACTTGTTTTTAAATGGGAAGAAAAGAGTGTTCTTAACGAAACTACTT CCTATTGTTGATGAAGATGATGGAGTTTTCATAGTAGGTTCAAGAGAAGATATTACAAAGAGAAAAGAAATGGAAATAGA GTTAGACAGAATGGCTAATTATGATGAATTAACTAATATTCCTAATATGAGATTATTTTTTAAATCTTTCAGAAATACTA TAAATGAAAGCAAAAAGATGGACAAGAAGTTTGCAGTTCTTTTTATAGATTTAGATTGGTTTAAGGAAATAAATGATAAT TATGGACATAATGTAGGGGATGAAGTTTTAGTTTGTGCAGTTAAAAGAATATACAAATGTTTAAGAAAGGGCGATATTCT AGGAAGAATAGGTGGAGATGAATTCGCAGCTATATTAAAGGATATAAGTGATAGAGAAGAAATTGAAAAAATAGTTAAAG ATATTCAAAACTCCTTAAGAAAAAGAATAAAAATAGGAGATGTTACATGTAATATTGACTCATCCATAGGTATAACAATA TTTCCAGAGGATGGAGAAAAAATAGAAGTACTTATGAGAAATTCTGATAAGGCTATGTATAAAGTAAAAAATAGAGAAAA GGGAGGATATAGATTTTTTAATAATATGATTAGAGAATATAACTTTAAAAATAAAGATGGTCATGTCCATACAAAATATT GCCCTCATGGTAGTGATGATAATATTGAAGATTATATTGAAGAAGCTATAAAATATAAGTTAGATGAAATAAGTTTTACT GAGCACCTTCCTCTTCCTGAAAATTTTATTGATCCTTCGCCTTTGAAAGATAGTGCTATGAAATTAGAAGAAATGGAATC CTATTTAAAAGAGGGACATGAGTTACAGGAAAAATATAAGGATAAGATAAAAGTAAATATTGGAGTAGAAGTAGACTATA TAGAAGGTTACGAGATTGAAACAGAATTGCTTTTAAATAAATATGGCAAATACTTAAATGATGGGATTTTATCCGTTCAT ATGATAAAAGGAAATAAAAGATATTATTGTATAGATTTTAGCGAAAAGGAATTTAAAAAAATCATAAATGATTTAGGTTC TTTAGAGGAATTATATAATAAATATTACGATACATTAATTATGGCTTTAAAAAGTGATTTAGGACCATACAAACCAAAAA GAATAGGACACTTAAATCTAGTAAGAAGGTTTAATAAGGAATTTCCATATAACTACGAAAAACATATTTCAAAGATAGAG GAAATACTAGATCTTATAAAAGAAAAAGGATATGAACTTGATTTTAACATTGCAGGTTTAAGAAAAAAAGAGTGTAATGA ATTCTATATAGAAGGAAAAGTTCTAGAAATGGCAATTGAGAAAGGCATACCTATGGTTTTAGGAAGTGATTCTCATTCTG CTAAATATATAAAATGTATAAAAGAATTCTTATAA
Upstream 100 bases:
>100_bases TTATATACTGTATATGGATAAAATGTTAATTTTTTATTGAAACATTAAAATTTATTTAATATTATTATTAAATAACATAC TTCACAAGTGAGGGTAAGAT
Downstream 100 bases:
>100_bases ATAAGATATGATTTAAAGTAGTGTTTGGTTTAGATAGTAATTATATATCTAAACTAAACACTTACCTAAAACAAAATCTT ATAGTAATTTTTAATTTCAT
Product: sensory box protein/histidinol phosphate phosphatase family protein
Products: NA
Alternate protein names: HolPase [H]
Number of amino acids: Translated: 624; Mature: 624
Protein sequence:
>624_residues MKNYYLEEVVDEIYYKEGKENRELKMDILSIKIENELKIIENLCGNCKRKNTLYEAIKNIKSLLKQYYIVFNGTQDALFL VEMLKDGNFKYVRNNNAYLHEFGLKGEEIINKTPKDVFGEELGKRFCNYYKNCIEGKRVVVFEDDLFLNGKKRVFLTKLL PIVDEDDGVFIVGSREDITKRKEMEIELDRMANYDELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEINDN YGHNVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNSLRKRIKIGDVTCNIDSSIGITI FPEDGEKIEVLMRNSDKAMYKVKNREKGGYRFFNNMIREYNFKNKDGHVHTKYCPHGSDDNIEDYIEEAIKYKLDEISFT EHLPLPENFIDPSPLKDSAMKLEEMESYLKEGHELQEKYKDKIKVNIGVEVDYIEGYEIETELLLNKYGKYLNDGILSVH MIKGNKRYYCIDFSEKEFKKIINDLGSLEELYNKYYDTLIMALKSDLGPYKPKRIGHLNLVRRFNKEFPYNYEKHISKIE EILDLIKEKGYELDFNIAGLRKKECNEFYIEGKVLEMAIEKGIPMVLGSDSHSAKYIKCIKEFL
Sequences:
>Translated_624_residues MKNYYLEEVVDEIYYKEGKENRELKMDILSIKIENELKIIENLCGNCKRKNTLYEAIKNIKSLLKQYYIVFNGTQDALFL VEMLKDGNFKYVRNNNAYLHEFGLKGEEIINKTPKDVFGEELGKRFCNYYKNCIEGKRVVVFEDDLFLNGKKRVFLTKLL PIVDEDDGVFIVGSREDITKRKEMEIELDRMANYDELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEINDN YGHNVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNSLRKRIKIGDVTCNIDSSIGITI FPEDGEKIEVLMRNSDKAMYKVKNREKGGYRFFNNMIREYNFKNKDGHVHTKYCPHGSDDNIEDYIEEAIKYKLDEISFT EHLPLPENFIDPSPLKDSAMKLEEMESYLKEGHELQEKYKDKIKVNIGVEVDYIEGYEIETELLLNKYGKYLNDGILSVH MIKGNKRYYCIDFSEKEFKKIINDLGSLEELYNKYYDTLIMALKSDLGPYKPKRIGHLNLVRRFNKEFPYNYEKHISKIE EILDLIKEKGYELDFNIAGLRKKECNEFYIEGKVLEMAIEKGIPMVLGSDSHSAKYIKCIKEFL >Mature_624_residues MKNYYLEEVVDEIYYKEGKENRELKMDILSIKIENELKIIENLCGNCKRKNTLYEAIKNIKSLLKQYYIVFNGTQDALFL VEMLKDGNFKYVRNNNAYLHEFGLKGEEIINKTPKDVFGEELGKRFCNYYKNCIEGKRVVVFEDDLFLNGKKRVFLTKLL PIVDEDDGVFIVGSREDITKRKEMEIELDRMANYDELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEINDN YGHNVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNSLRKRIKIGDVTCNIDSSIGITI FPEDGEKIEVLMRNSDKAMYKVKNREKGGYRFFNNMIREYNFKNKDGHVHTKYCPHGSDDNIEDYIEEAIKYKLDEISFT EHLPLPENFIDPSPLKDSAMKLEEMESYLKEGHELQEKYKDKIKVNIGVEVDYIEGYEIETELLLNKYGKYLNDGILSVH MIKGNKRYYCIDFSEKEFKKIINDLGSLEELYNKYYDTLIMALKSDLGPYKPKRIGHLNLVRRFNKEFPYNYEKHISKIE EILDLIKEKGYELDFNIAGLRKKECNEFYIEGKVLEMAIEKGIPMVLGSDSHSAKYIKCIKEFL
Specific function: Unknown
COG id: COG1387
COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PHP hydrolase family. HisK subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=186, Percent_Identity=32.258064516129, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI87081881, Length=288, Percent_Identity=28.8194444444444, Blast_Score=96, Evalue=9e-21, Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=31.7204301075269, Blast_Score=93, Evalue=5e-20, Organism=Escherichia coli, GI1788381, Length=176, Percent_Identity=31.8181818181818, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=29.2397660818713, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=32, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=32.3699421965318, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=32.2784810126582, Blast_Score=83, Evalue=6e-17, Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=33.5260115606936, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=32.9268292682927, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=29.2682926829268, Blast_Score=73, Evalue=5e-14, Organism=Escherichia coli, GI1787802, Length=126, Percent_Identity=30.1587301587302, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010140 - InterPro: IPR004013 - InterPro: IPR016195 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: =3.1.3.15 [H]
Molecular weight: Translated: 73390; Mature: 73390
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: PS50113 PAC ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNYYLEEVVDEIYYKEGKENRELKMDILSIKIENELKIIENLCGNCKRKNTLYEAIKNI CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH KSLLKQYYIVFNGTQDALFLVEMLKDGNFKYVRNNNAYLHEFGLKGEEIINKTPKDVFGE HHHHHHEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECCCCHHHHHCCCCHHHHHH ELGKRFCNYYKNCIEGKRVVVFEDDLFLNGKKRVFLTKLLPIVDEDDGVFIVGSREDITK HHHHHHHHHHHHHHCCCEEEEEECCEEECCCCEEHHHHHCCCEECCCCEEEEECCHHHHH RKEMEIELDRMANYDELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEINDN HHHHCEEHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHCCC YGHNVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNSLR CCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH KRIKIGDVTCNIDSSIGITIFPEDGEKIEVLMRNSDKAMYKVKNREKGGYRFFNNMIREY HHEEECCEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHC NFKNKDGHVHTKYCPHGSDDNIEDYIEEAIKYKLDEISFTEHLPLPENFIDPSPLKDSAM CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH KLEEMESYLKEGHELQEKYKDKIKVNIGVEVDYIEGYEIETELLLNKYGKYLNDGILSVH HHHHHHHHHHCCHHHHHHHHCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE MIKGNKRYYCIDFSEKEFKKIINDLGSLEELYNKYYDTLIMALKSDLGPYKPKRIGHLNL EEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH VRRFNKEFPYNYEKHISKIEEILDLIKEKGYELDFNIAGLRKKECNEFYIEGKVLEMAIE HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCEEECCHHHHHHHH KGIPMVLGSDSHSAKYIKCIKEFL CCCCEEECCCCCCHHHHHHHHHHC >Mature Secondary Structure MKNYYLEEVVDEIYYKEGKENRELKMDILSIKIENELKIIENLCGNCKRKNTLYEAIKNI CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH KSLLKQYYIVFNGTQDALFLVEMLKDGNFKYVRNNNAYLHEFGLKGEEIINKTPKDVFGE HHHHHHEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECCCCHHHHHCCCCHHHHHH ELGKRFCNYYKNCIEGKRVVVFEDDLFLNGKKRVFLTKLLPIVDEDDGVFIVGSREDITK HHHHHHHHHHHHHHCCCEEEEEECCEEECCCCEEHHHHHCCCEECCCCEEEEECCHHHHH RKEMEIELDRMANYDELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEINDN HHHHCEEHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHCCC YGHNVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNSLR CCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH KRIKIGDVTCNIDSSIGITIFPEDGEKIEVLMRNSDKAMYKVKNREKGGYRFFNNMIREY HHEEECCEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHC NFKNKDGHVHTKYCPHGSDDNIEDYIEEAIKYKLDEISFTEHLPLPENFIDPSPLKDSAM CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH KLEEMESYLKEGHELQEKYKDKIKVNIGVEVDYIEGYEIETELLLNKYGKYLNDGILSVH HHHHHHHHHHCCHHHHHHHHCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE MIKGNKRYYCIDFSEKEFKKIINDLGSLEELYNKYYDTLIMALKSDLGPYKPKRIGHLNL EEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH VRRFNKEFPYNYEKHISKIEEILDLIKEKGYELDFNIAGLRKKECNEFYIEGKVLEMAIE HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCEEECCHHHHHHHH KGIPMVLGSDSHSAKYIKCIKEFL CCCCEEECCCCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377; 10322033 [H]