| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is nplT [H]
Identifier: 18309787
GI number: 18309787
Start: 988114
End: 989946
Strand: Direct
Name: nplT [H]
Synonym: CPE0805
Alternate gene names: 18309787
Gene position: 988114-989946 (Clockwise)
Preceding gene: 18309786
Following gene: 18309788
Centisome position: 32.6
GC content: 30.28
Gene sequence:
>1833_bases ATGGGTAAAATTACAAGAGAGGCAATACATCATATAGCTCAAAGCAATTATTCTTATGGATATGATAATGAAACTTTGCA TTTAAGAGTTAAGACTAAAAAAGGTGAAGTTAATAAAGTGGAAATAAGAATTGGAGATCCTTACATATGGGATGAAGGTG GTTGTGATGGAGGAAATATGAATGCCACTGGAGGACGATGGACAGGTGGAAAAAGTTATCCTATGAGAAAGGAATGCGAA ACAAAATACTTTGATCACTGGATAGTAGGGTATAAACCATTAACCAAACGTTCAAGATATGGATTTATATTATATGGAGA TGAGGAAACTCTTTTATGCACAGAAAAAAGAATAGAGGAGTTAGATGGAAAGTATGATGAAGAAAAATTAAGTGCTATAG GAAACTTTTATTGTTTTCCATATTTAAATGCCATAGATGTTGCTAAAACACCACAATGGGTAAAGGATACTGTTTGGTAT CAAATATTCCCAGATAGATTTTGCAATGGAGATAAATCAATAGATCCAGAAAATGTTGAGCCATGGGGGACAGAGCCTAC TAGGGATAATTTTATGGGAGGAGATTTACAGGGAGTTTTAGATAAATTAGATTACTTATGCGATCTTGGAATTAATGGAC TATATTTTTGTCCAGTATTTGAAGCTACTGAGAATCATAGGTATGAAACTATAGATTATTTTAAAGTAGATCCAGCACTT GGTGGGAATGAAGTCTTTAAAAAACTTGTAAGTGAAGCTCACAAAAGAGGCATGAAAATAATGTTAGATGCAGTATTTAA TCATATAGGTTATTTTTCACCAAAATGGCAAGATGTATTAAAGAATAATGAAAAATCAAGATATAAGGATTGGTTTTGTA TAAAGAAGTTCCCAGTGCTTGAAAATGGCTTAGAAAATGTTGATGGAAATAATTTGAATTATGAAACCTTTGGAAGAATA GCCACAATGCCTAAACTAAATACTGAAAACCCAGAGGTTGTAGAATATTTATTAAAAGTCGCTAAGTTCTGGGTTGAAGA AATGGATATAGATGGTTGGAGACTTGATGTATGTAATGAAGTAGACCATGTATTTTGGAGAAAATTTAGGGAAGTAGTAA AGGGAACTAATAAAGAAGTTTATATATTAGGAGAAGTTTGGCATGATGGACTTCCATGGCTTATGGGAGATCAGTTTGAT TCAGTTATGAATTACCCTGTTACAGATGCAGTAAAAGAATATTTTTGTTTAAATCAATCTAATCCAGAAGATTTTAAATA TATGATAGAAGCTAATAAGGTTAGCTATTTAAGACAAATAGGAGAAACAATATTTAACTTGTTAGATAGTCATGATACTC CAAGAATATTAACTGTAGCTGGAGGAAATAAGGATAAGATGAAACTAGCTTATCTGTTTATGTTTACTCAAGCTGGCTCT CCATGTATATATTATGGAGATGAAGTTGGTATGGAAGGAAATCAAGGAATGGGTATGGAATTCCATAGAAGATGTATGAT TTGGGATGAAAATAAACAAGACAAAGATATGCTTAAGTTTATGAAACAAATAATAAAAATAAGAAAAGAAAATAAGGAAT TAAATTTATTAGATAATAATTGGATAAGAGCTAATAAGGATGAAAATATACTTATTTATTCAAAGGAAAATATATTTATA ATTATGAACAATTCAGAGAATGAAGAAAAGATATATTTACCTAAGGAGCTTAAAAATAATAAGATTAATGATTTATTTGA AGAAAAAATTGAACTCTTAAAAGAAGATATAGACTTAAAGCCCTTTGCATTTAAAGTTTATAAAAAGCTTTAA
Upstream 100 bases:
>100_bases GAGAAGATACACATATAAATATTTTTTTGATTTGTTTTGGTACCGTTACCAAAATTGTTTGTAATAATTTATGATTATAA TATTATGGAGGGTTAAATTT
Downstream 100 bases:
>100_bases TATTTAATAAATTAAAAAAAGAGTAAGAATTTTAGAATGTATTATATTTTATAATTTTTACTCTTTTTATTTATATTTAG AAAGGATAAAATAACTATAG
Product: cyclomaltodextrinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MGKITREAIHHIAQSNYSYGYDNETLHLRVKTKKGEVNKVEIRIGDPYIWDEGGCDGGNMNATGGRWTGGKSYPMRKECE TKYFDHWIVGYKPLTKRSRYGFILYGDEETLLCTEKRIEELDGKYDEEKLSAIGNFYCFPYLNAIDVAKTPQWVKDTVWY QIFPDRFCNGDKSIDPENVEPWGTEPTRDNFMGGDLQGVLDKLDYLCDLGINGLYFCPVFEATENHRYETIDYFKVDPAL GGNEVFKKLVSEAHKRGMKIMLDAVFNHIGYFSPKWQDVLKNNEKSRYKDWFCIKKFPVLENGLENVDGNNLNYETFGRI ATMPKLNTENPEVVEYLLKVAKFWVEEMDIDGWRLDVCNEVDHVFWRKFREVVKGTNKEVYILGEVWHDGLPWLMGDQFD SVMNYPVTDAVKEYFCLNQSNPEDFKYMIEANKVSYLRQIGETIFNLLDSHDTPRILTVAGGNKDKMKLAYLFMFTQAGS PCIYYGDEVGMEGNQGMGMEFHRRCMIWDENKQDKDMLKFMKQIIKIRKENKELNLLDNNWIRANKDENILIYSKENIFI IMNNSENEEKIYLPKELKNNKINDLFEEKIELLKEDIDLKPFAFKVYKKL
Sequences:
>Translated_610_residues MGKITREAIHHIAQSNYSYGYDNETLHLRVKTKKGEVNKVEIRIGDPYIWDEGGCDGGNMNATGGRWTGGKSYPMRKECE TKYFDHWIVGYKPLTKRSRYGFILYGDEETLLCTEKRIEELDGKYDEEKLSAIGNFYCFPYLNAIDVAKTPQWVKDTVWY QIFPDRFCNGDKSIDPENVEPWGTEPTRDNFMGGDLQGVLDKLDYLCDLGINGLYFCPVFEATENHRYETIDYFKVDPAL GGNEVFKKLVSEAHKRGMKIMLDAVFNHIGYFSPKWQDVLKNNEKSRYKDWFCIKKFPVLENGLENVDGNNLNYETFGRI ATMPKLNTENPEVVEYLLKVAKFWVEEMDIDGWRLDVCNEVDHVFWRKFREVVKGTNKEVYILGEVWHDGLPWLMGDQFD SVMNYPVTDAVKEYFCLNQSNPEDFKYMIEANKVSYLRQIGETIFNLLDSHDTPRILTVAGGNKDKMKLAYLFMFTQAGS PCIYYGDEVGMEGNQGMGMEFHRRCMIWDENKQDKDMLKFMKQIIKIRKENKELNLLDNNWIRANKDENILIYSKENIFI IMNNSENEEKIYLPKELKNNKINDLFEEKIELLKEDIDLKPFAFKVYKKL >Mature_609_residues GKITREAIHHIAQSNYSYGYDNETLHLRVKTKKGEVNKVEIRIGDPYIWDEGGCDGGNMNATGGRWTGGKSYPMRKECET KYFDHWIVGYKPLTKRSRYGFILYGDEETLLCTEKRIEELDGKYDEEKLSAIGNFYCFPYLNAIDVAKTPQWVKDTVWYQ IFPDRFCNGDKSIDPENVEPWGTEPTRDNFMGGDLQGVLDKLDYLCDLGINGLYFCPVFEATENHRYETIDYFKVDPALG GNEVFKKLVSEAHKRGMKIMLDAVFNHIGYFSPKWQDVLKNNEKSRYKDWFCIKKFPVLENGLENVDGNNLNYETFGRIA TMPKLNTENPEVVEYLLKVAKFWVEEMDIDGWRLDVCNEVDHVFWRKFREVVKGTNKEVYILGEVWHDGLPWLMGDQFDS VMNYPVTDAVKEYFCLNQSNPEDFKYMIEANKVSYLRQIGETIFNLLDSHDTPRILTVAGGNKDKMKLAYLFMFTQAGSP CIYYGDEVGMEGNQGMGMEFHRRCMIWDENKQDKDMLKFMKQIIKIRKENKELNLLDNNWIRANKDENILIYSKENIFII MNNSENEEKIYLPKELKNNKINDLFEEKIELLKEDIDLKPFAFKVYKKL
Specific function: Hydrolyzes pullulan efficiently but only a small amount of starch. Endohydrolysis of 1,4-alpha-glucosidic linkages in pullulan to form panose. Cleaves also (1-6)-alpha-glucosidic linkages to form maltotriose [H]
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Homo sapiens, GI187423904, Length=397, Percent_Identity=24.9370277078086, Blast_Score=79, Evalue=9e-15, Organism=Escherichia coli, GI1786604, Length=492, Percent_Identity=30.0813008130081, Blast_Score=204, Evalue=1e-53, Organism=Escherichia coli, GI1790687, Length=394, Percent_Identity=26.1421319796954, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1789995, Length=439, Percent_Identity=24.8291571753986, Blast_Score=93, Evalue=5e-20, Organism=Saccharomyces cerevisiae, GI6322245, Length=230, Percent_Identity=26.9565217391304, Blast_Score=83, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6321726, Length=284, Percent_Identity=23.943661971831, Blast_Score=77, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322241, Length=224, Percent_Identity=25.8928571428571, Blast_Score=75, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322021, Length=224, Percent_Identity=25.8928571428571, Blast_Score=75, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6319776, Length=226, Percent_Identity=26.5486725663717, Blast_Score=74, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6321731, Length=226, Percent_Identity=26.5486725663717, Blast_Score=74, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6324416, Length=224, Percent_Identity=25.8928571428571, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24583747, Length=408, Percent_Identity=24.2647058823529, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24583749, Length=408, Percent_Identity=24.2647058823529, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI221330053, Length=412, Percent_Identity=23.0582524271845, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24583745, Length=280, Percent_Identity=25.3571428571429, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI24586599, Length=227, Percent_Identity=27.7533039647577, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004185 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N [H]
EC number: =3.2.1.135 [H]
Molecular weight: Translated: 71489; Mature: 71358
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKITREAIHHIAQSNYSYGYDNETLHLRVKTKKGEVNKVEIRIGDPYIWDEGGCDGGNM CCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCEEECCCCCCCCCC NATGGRWTGGKSYPMRKECETKYFDHWIVGYKPLTKRSRYGFILYGDEETLLCTEKRIEE CCCCCCCCCCCCCCCCHHHHHHHHCEEEECCCCCCCCCCEEEEEECCCCEEEEHHHHHHH LDGKYDEEKLSAIGNFYCFPYLNAIDVAKTPQWVKDTVWYQIFPDRFCNGDKSIDPENVE HCCCCCHHHHHHHHCEEEECCCCHHCCCCCCHHHHHHHEEEECCHHHCCCCCCCCCCCCC PWGTEPTRDNFMGGDLQGVLDKLDYLCDLGINGLYFCPVFEATENHRYETIDYFKVDPAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEECCCC GGNEVFKKLVSEAHKRGMKIMLDAVFNHIGYFSPKWQDVLKNNEKSRYKDWFCIKKFPVL CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHCCEEEEECCCHH ENGLENVDGNNLNYETFGRIATMPKLNTENPEVVEYLLKVAKFWVEEMDIDGWRLDVCNE HCCCCCCCCCCCCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH VDHVFWRKFREVVKGTNKEVYILGEVWHDGLPWLMGDQFDSVMNYPVTDAVKEYFCLNQS HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCC NPEDFKYMIEANKVSYLRQIGETIFNLLDSHDTPRILTVAGGNKDKMKLAYLFMFTQAGS CCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEECCCC PCIYYGDEVGMEGNQGMGMEFHRRCMIWDENKQDKDMLKFMKQIIKIRKENKELNLLDNN CEEEECCCCCCCCCCCCCHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC WIRANKDENILIYSKENIFIIMNNSENEEKIYLPKELKNNKINDLFEEKIELLKEDIDLK CEECCCCCEEEEEECCCEEEEECCCCCCCEEECCHHHCCCCHHHHHHHHHHHHHHCCCCC PFAFKVYKKL HHHHHHHHCC >Mature Secondary Structure GKITREAIHHIAQSNYSYGYDNETLHLRVKTKKGEVNKVEIRIGDPYIWDEGGCDGGNM CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCEEECCCCCCCCCC NATGGRWTGGKSYPMRKECETKYFDHWIVGYKPLTKRSRYGFILYGDEETLLCTEKRIEE CCCCCCCCCCCCCCCCHHHHHHHHCEEEECCCCCCCCCCEEEEEECCCCEEEEHHHHHHH LDGKYDEEKLSAIGNFYCFPYLNAIDVAKTPQWVKDTVWYQIFPDRFCNGDKSIDPENVE HCCCCCHHHHHHHHCEEEECCCCHHCCCCCCHHHHHHHEEEECCHHHCCCCCCCCCCCCC PWGTEPTRDNFMGGDLQGVLDKLDYLCDLGINGLYFCPVFEATENHRYETIDYFKVDPAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEECCCC GGNEVFKKLVSEAHKRGMKIMLDAVFNHIGYFSPKWQDVLKNNEKSRYKDWFCIKKFPVL CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHCCEEEEECCCHH ENGLENVDGNNLNYETFGRIATMPKLNTENPEVVEYLLKVAKFWVEEMDIDGWRLDVCNE HCCCCCCCCCCCCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH VDHVFWRKFREVVKGTNKEVYILGEVWHDGLPWLMGDQFDSVMNYPVTDAVKEYFCLNQS HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCC NPEDFKYMIEANKVSYLRQIGETIFNLLDSHDTPRILTVAGGNKDKMKLAYLFMFTQAGS CCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEECCCC PCIYYGDEVGMEGNQGMGMEFHRRCMIWDENKQDKDMLKFMKQIIKIRKENKELNLLDNN CEEEECCCCCCCCCCCCCHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC WIRANKDENILIYSKENIFIIMNNSENEEKIYLPKELKNNKINDLFEEKIELLKEDIDLK CEECCCCCEEEEEECCCEEEEECCCCCCCEEECCHHHCCCCHHHHHHHHHHHHHHCCCCC PFAFKVYKKL HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2482332; 12547200 [H]