Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is pfoS/R

Identifier: 18309767

GI number: 18309767

Start: 969653

End: 970711

Strand: Direct

Name: pfoS/R

Synonym: CPE0785

Alternate gene names: NA

Gene position: 969653-970711 (Clockwise)

Preceding gene: 18309765

Following gene: 18309768

Centisome position: 31.99

GC content: 31.54

Gene sequence:

>1059_bases
ATGACACAAAAGAATGTTTCAAAGAAAGATAAGTTAACACCAAAAGATTATTTAAATAAAGTTTTGGCAGGAACTGCAAC
AGGGATAGTTGTAGGGTTAATTCCTAATGCAATATTAGGATCAATTTTTAAAGGGCTAATAGGGGTTTCACCTATATTTT
CTACTTTTTATAATGCCGTGAATATTATGCAGTTTATAGTACCTGTGCTTGTGGGAGTCTTAGTTGGATTACAGTTTGAA
TTAAATGCTATGCAATCAGTTATAGTTGGAGCAGCAGTATTCTTAGGTTCAGGGGCATTTAAGGTTACTGAAGCAGGAGT
ACAAATGGTTGGTATTGGAGACTTAATAAATATAATGTTAGTTTCTTGTATAGCTGTATTTGTTATTAGATTAATAGGAA
ATAAATTAGGATCTTTAACTATATTATTACTACCTATTATAGCTGGCGCTGGAGTTGGTATAATAGGAATGTTTATGTTA
CCTTATGTAAGACAAATTACCATAGTAATTGGAGATATAATGAATAACTTTACTACTTTACAGCCATTATTAATGTGTAT
TTTAATAAGTGTTTCATTCTCAATATTAATTATTTCACCAATTTCAACTGTGGCAATAGGTATAGCTATTGGAATAACTG
GCTTAGGAGCTGGGGCAGCTGCCATAGGAGTTACTGCTTGTACAGCAGTTTTAGTTGCAGGATCAAGAAGAGTAAATCAA
AGTGGAGTTACTTTATCAGTATTATTAGGAGCTATGAAAATGATGATGCCAAACCTAGTAGAATACCCAATAATAGCAGT
TCCAATAATAGCAAATGGAATACTAAGTGGAATAGGAGCTTATTTATTTAATATATTAGGTACACCTAATAGTGCAGGAT
TTGGTATAGTTGGATTAGTTGGACCTTTAGCGGCTATAAATACTCCAGGGGCTACAAATGCTATATTTGGAGTAATAATG
GCATTCTTTGTAATACCTTTTGTAGGAGCATTTATTATTGAATGGTTCTGTAGAAAAGTTATACATTTATATGATGAAAA
TATTTTTAAATATATTTAA

Upstream 100 bases:

>100_bases
CTTTGAATAATAAATATTTTTAGAGAAATAATATTTAATGAATTTTGTATTGTTATAGATTTTAACTAACAAAAAATTTT
ATAATAGGAAGAAGAGAGAG

Downstream 100 bases:

>100_bases
TTTACAAAAAAGATAATAGAGGAGAGTTGATTTAAATGAAAATCGCAATTGTTGGAGCAGGAGCAATGGGCTCACGTTAT
GGATATATGTTACATGAAGC

Product: regulatory protein

Products: NA

Alternate protein names: PTS System IIC Component; PTS System Fructose-Specific IIBC Component; Membrane Spanning Protein; Phosphotransferase System; Pts System Fructose-Specific IIbc Component; Xin Regulator-Like Membrane Protein

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MTQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAVNIMQFIVPVLVGVLVGLQFE
LNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIMLVSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFML
PYVRQITIVIGDIMNNFTTLQPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ
SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLVGPLAAINTPGATNAIFGVIM
AFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI

Sequences:

>Translated_352_residues
MTQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAVNIMQFIVPVLVGVLVGLQFE
LNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIMLVSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFML
PYVRQITIVIGDIMNNFTTLQPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ
SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLVGPLAAINTPGATNAIFGVIM
AFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI
>Mature_351_residues
TQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAVNIMQFIVPVLVGVLVGLQFEL
NAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIMLVSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFMLP
YVRQITIVIGDIMNNFTTLQPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQS
GVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLVGPLAAINTPGATNAIFGVIMA
FFVIPFVGAFIIEWFCRKVIHLYDENIFKYI

Specific function: Unknown

COG id: COG3641

COG function: function code R; Predicted membrane protein, putative toxin regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36691; Mature: 36560

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIMQFIVPVLVGVLVGLQFELNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIML
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHHH
VSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFMLPYVRQITIVIGDIMNNFTTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ
HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLV
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
GPLAAINTPGATNAIFGVIMAFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQKNVSKKDKLTPKDYLNKVLAGTATGIVVGLIPNAILGSIFKGLIGVSPIFSTFYNAV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIMQFIVPVLVGVLVGLQFELNAMQSVIVGAAVFLGSGAFKVTEAGVQMVGIGDLINIML
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECHHHHHHHHH
VSCIAVFVIRLIGNKLGSLTILLLPIIAGAGVGIIGMFMLPYVRQITIVIGDIMNNFTTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPLLMCILISVSFSILIISPISTVAIGIAIGITGLGAGAAAIGVTACTAVLVAGSRRVNQ
HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
SGVTLSVLLGAMKMMMPNLVEYPIIAVPIIANGILSGIGAYLFNILGTPNSAGFGIVGLV
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
GPLAAINTPGATNAIFGVIMAFFVIPFVGAFIIEWFCRKVIHLYDENIFKYI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA