| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is rfbC [H]
Identifier: 18309599
GI number: 18309599
Start: 773532
End: 774014
Strand: Direct
Name: rfbC [H]
Synonym: CPE0617
Alternate gene names: 18309599
Gene position: 773532-774014 (Clockwise)
Preceding gene: 18309598
Following gene: 18309600
Centisome position: 25.52
GC content: 30.23
Gene sequence:
>483_bases ATGGAAACATATAGTCAAAAAGCTTTTGAAGAAGCTGGACTTACTATGAAATTTGTTCAAGATAATGAATCAAAATCTAA AAAAGGTGTTTTAAGAGGATTACATTTCCAAACTAAACATACTCAAGGAAAGCTTGTTAGAGTAACTCAAGGAGAGGTTT GGGATGTAGCTGTAGATTTAAGAAAAGGATCACCTACATTTGGACAATGGGAAGGTGTTCATTTAAGTGCAGAAAATAAA AGACAATTCTACGTTCCAGAAGGATTTGCTCATGGATTTGTAGTTTTATCTGATGAAGCTGTATTTAACTATAAATGTAC AGATTTTTATGCTCCAGAATATGACAGTGGACTTCTTTGGAATGATAAATATGTTAATGTAGAATGGCCTTTAGAAGGAA TAGAAGAAATAATCTTATCAGAAAAAGATAAGAAACAAAAAACTTTAAAAGAATTAGATATTCCTTTTATATATGAAGGT TAA
Upstream 100 bases:
>100_bases AAGTGGTGAAAAGATGAGTAACTTTAAATTTATAGAAACAAAAATAAAAGATTTATATATTATAGAACCAAAAGTTTTTG GAGATGAAAGAGGATATTTC
Downstream 100 bases:
>100_bases TAGGAGGAAGTCTATGAAAATATTAATAACAGGTTCAAATGGACAATTAGGAAATGAACTTCAATCAATAATAAAAAGTG GAAAAGCAGAAATAGGTTCA
Product: dTDP-4-dehydrorhamnose 3,5-epimerase
Products: NA
Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]
Number of amino acids: Translated: 160; Mature: 160
Protein sequence:
>160_residues METYSQKAFEEAGLTMKFVQDNESKSKKGVLRGLHFQTKHTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENK RQFYVPEGFAHGFVVLSDEAVFNYKCTDFYAPEYDSGLLWNDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIYEG
Sequences:
>Translated_160_residues METYSQKAFEEAGLTMKFVQDNESKSKKGVLRGLHFQTKHTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENK RQFYVPEGFAHGFVVLSDEAVFNYKCTDFYAPEYDSGLLWNDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIYEG >Mature_160_residues METYSQKAFEEAGLTMKFVQDNESKSKKGVLRGLHFQTKHTQGKLVRVTQGEVWDVAVDLRKGSPTFGQWEGVHLSAENK RQFYVPEGFAHGFVVLSDEAVFNYKCTDFYAPEYDSGLLWNDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIYEG
Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]
COG id: COG1898
COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]
Homologues:
Organism=Escherichia coli, GI1788350, Length=153, Percent_Identity=54.2483660130719, Blast_Score=165, Evalue=1e-42, Organism=Caenorhabditis elegans, GI17550412, Length=153, Percent_Identity=46.4052287581699, Blast_Score=132, Evalue=9e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR000888 - InterPro: IPR014710 - ProDom: PD001462 [H]
Pfam domain/function: PF00908 dTDP_sugar_isom [H]
EC number: =5.1.3.13 [H]
Molecular weight: Translated: 18448; Mature: 18448
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METYSQKAFEEAGLTMKFVQDNESKSKKGVLRGLHFQTKHTQGKLVRVTQGEVWDVAVDL CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCEEEECCCCCCEEEEECCCEEEEEEEE RKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSDEAVFNYKCTDFYAPEYDSGLLW ECCCCCCCCCCCEEEECCCCEEEECCCCCCCCEEEEECCEEEEEEECCEECCCCCCCCEE NDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIYEG CCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCEEECC >Mature Secondary Structure METYSQKAFEEAGLTMKFVQDNESKSKKGVLRGLHFQTKHTQGKLVRVTQGEVWDVAVDL CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCEEEECCCCCCEEEEECCCEEEEEEEE RKGSPTFGQWEGVHLSAENKRQFYVPEGFAHGFVVLSDEAVFNYKCTDFYAPEYDSGLLW ECCCCCCCCCCCEEEECCCCEEEECCCCCCCCEEEEECCEEEEEEECCEECCCCCCCCEE NDKYVNVEWPLEGIEEIILSEKDKKQKTLKELDIPFIYEG CCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371463; 10827167 [H]