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The map label for this gene is xynZ [H]

Identifier: 182679567

GI number: 182679567

Start: 3007211

End: 3009523

Strand: Reverse

Name: xynZ [H]

Synonym: Bind_2643

Alternate gene names: 182679567

Gene position: 3009523-3007211 (Counterclockwise)

Preceding gene: 182679568

Following gene: 182679566

Centisome position: 72.17

GC content: 47.0

Gene sequence:

>2313_bases
ATGCGCCTTTTATTATTTACAAGTGAATTTTATCCTTTACGCGGTGGAATCGGGACATATGCAGCCGAACTCGCCCGCGG
TGCTACGGAGCTTGGTGGTGACGTAACGTTATACGCACCGTCCTATCACCAAGACTTAGCTGATGATGACTTAAAATGCT
TTCCTTTCCGTGTTATCCGCTATGCCGGGCATCGGCATACGATGAAGAATCTTCCGCAAAAATTGCAGATTGTGCGCCGT
GCAGTTCGATCCGAGACATTTGATATTATTCATGCCATGGATTGGCCCTTCTTCCTGCCAGTCCACCTCATGGCTCCATC
AAAAGTGCACAAACTGTTCACAGTACATGGTAGTGATGTCAATGAAATGCGGGCGCCGGTTAAAGCAACTATCATATCGT
TAGTTCGACTATTCTCGGGTAAATCGGAAATTTTAGCAAATAGTAACTTTACTCGTTCTCTCTTCAACCAACATTTCCCC
GACATACCACCCCATAAAGTAAAAACGGAGTGGCTTGGAGTATCGGATTTCTGGTTTCAACCAGCTGCTAATCGTAGCGA
AACGAGATTCAAACTCGGTGTTGCAGATGATGCTTATGTCATTCTCACGGTAGGACGCCTCACGCCCAGAAAAGGCCATC
TCTCTGTAATTGAAGCTCTATCACGTCTTCCAGAGCGTATTAAGGAACACACGATTTATATAATCGTCGGACCTCACTAT
GATGGTGAGTACACCAGTAAGGTGAAGGTTGCTGCTGCGGCGTCTGGATGCAAAACATTGTTTTTAAATGAACTATCAGA
CGACGTCTTGCGTGATCTTTACAAGGCGTGCGATGTGTTTTGCCTCACTGGACACACAAAGCTAAACGGTCTTGTCGAAG
GTTTCGGACTTGTCTATTTGGAAGCTGGCGCACAAGGGTTACCGTCGATCGCTGGTAACGTTGGCGGTATGCCGGAAGCT
GTTGAGCACGGAAAATCTGGATTGGTCGTCAATAGCAACGATGCAGACTCTATCGCGCAATCATTGTGTGAACTCCATGA
TCTTCCGAGATTCCGCCAAGCATTGGCAGATGGAGCGCTTGAACGAGCGAAGATTTTGACTTGGCGCCGTTGTGTTGCAG
CTTCGTATGGTTTTTCATCCCATCATGCAAAGTGGCTCCAACCACATTCTAGTCCAATTTCTCTTACATCAGATATCACC
CAACCGCAGAATGGGCTTGCGCGCCGTAGTGTGCTTGGAGCCTTCGCGTCAGTTGGACTTCTTAAAACGAAAATATTAGC
GGCAACGCCCACAACGATCCTTCCTTTGAAGCAGGCTGCCGCACGCGTAGGTCTTTTATTCGGATGTGCTTTCGATAAGA
TAGCGATTTCTGATGCAGCCTATGGAGCGCTCATCAAGACTCACGCTGCAATCCTTACAACCGATTACCATATGAAATTT
AAGGCACTTCGTCGTAATGGACCAGAAGCGGATTTCACGATCGCAGATAGTTTAATTACGTTTGCGGATGCGGCAAGTAT
CCCTATTCGTGGCCATAATCTGATTTGGAACGAGGGAAATCCAGATTGGTTAATCAAACTTCCTGCAAATGAACGCATTG
AGTGGTTAGAACGCCATATCAAGGAGGTGATGGGGCGTTATCGTGGCCGCATACATTCTTGGGATGTAGTCAATGAGCCT
TTTTGGCCTGGCCATAAAAAGCCAGGCGGCTTTCGGGATGGCCCTTGGTATTCCGCACTTGGACCAGAATATATCATCAA
GGCTTTTCAAATAGCTCGACGCACCGATCCGTCAGCTAAGCTCGTCTTAAATGAAGCTTGGGTGGAACGGTCTGATGATC
TCGGCTTAGTTGTTCGCGAGGAGTTGTTTAAGCTTCTCCAGGATCTTTCGGTGCGAGGTCTTATTGATGCAGTTGGTCTT
GAGTGTCATATCCGCCCCCATTATACGCGAAATTTCGATATCCTTGCACAATTCATCGCAAAGGTGAGTACGCTTGGAAT
TGATGTCTATATCACCGAACTCGATGTTGATGATTCTATTTTCTCTGGCTCGATGTCTGAGATCGACGATAAGGTCGCCG
AAATCTATGGGGATTTCGTCCGTGCTATCACAAAAGCTCCAGCCGTGAAAATCTTAGAGACTTGGCAATTGGCTGATCGC
TATAGCTTTTATCAAGATCAGCGTAAGGGAACAGCGCGTCCTTTACCATTTGACACTTCACTTGCACCTAAGCCAGCATA
CCATACAATTATTAGCGCTCTTATAGACGCCGGCTCTCAACCTGTTGGAGTAGTCAGGACACCCCAACACTAG

Upstream 100 bases:

>100_bases
TTATTTCGCAATCTAACCTAGCTACGCCAAGGCAAAGTTATCGTGCTGCAGGTATGCTCCGATTGATGATTGAGGCTCTA
ACAAACTTCGGGTTTTCCAC

Downstream 100 bases:

>100_bases
ATTCCGTTGACAAAGAGGATTCCCAAGAGATTACAAAAAGATTCAAAGCTGCTTTTTTAGGGCAGGGGGGCAAATCTTAG
TTCTGAGGTGATGTCGGATG

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]

Number of amino acids: Translated: 770; Mature: 770

Protein sequence:

>770_residues
MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIRYAGHRHTMKNLPQKLQIVRR
AVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDVNEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFP
DIPPHKVKTEWLGVSDFWFQPAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY
DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYLEAGAQGLPSIAGNVGGMPEA
VEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGALERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDIT
QPQNGLARRSVLGAFASVGLLKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF
KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHIKEVMGRYRGRIHSWDVVNEP
FWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAKLVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGL
ECHIRPHYTRNFDILAQFIAKVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR
YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH

Sequences:

>Translated_770_residues
MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIRYAGHRHTMKNLPQKLQIVRR
AVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDVNEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFP
DIPPHKVKTEWLGVSDFWFQPAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY
DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYLEAGAQGLPSIAGNVGGMPEA
VEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGALERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDIT
QPQNGLARRSVLGAFASVGLLKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF
KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHIKEVMGRYRGRIHSWDVVNEP
FWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAKLVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGL
ECHIRPHYTRNFDILAQFIAKVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR
YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH
>Mature_770_residues
MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIRYAGHRHTMKNLPQKLQIVRR
AVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDVNEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFP
DIPPHKVKTEWLGVSDFWFQPAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY
DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYLEAGAQGLPSIAGNVGGMPEA
VEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGALERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDIT
QPQNGLARRSVLGAFASVGLLKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF
KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHIKEVMGRYRGRIHSWDVVNEP
FWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAKLVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGL
ECHIRPHYTRNFDILAQFIAKVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR
YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR016134
- InterPro:   IPR002105
- InterPro:   IPR006584
- InterPro:   IPR018242
- InterPro:   IPR018247
- InterPro:   IPR000801
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 85574; Mature: 85574

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIR
CEEEEEECCCCCCCCCHHHHHHHHHHCHHHCCCCEEEECCCHHCCCCCCCCHHHHHHHHH
YAGHRHTMKNLPQKLQIVRRAVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDV
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHEEEEEECCCCH
NEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFPDIPPHKVKTEWLGVSDFWFQ
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCC
PAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY
CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCC
DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYL
CCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCEEEE
EAGAQGLPSIAGNVGGMPEAVEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGAL
ECCCCCCCHHHCCCCCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH
ERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDITQPQNGLARRSVLGAFASVGL
HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHH
LKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF
HHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECHHHHH
KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHI
HHHHCCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHH
KEVMGRYRGRIHSWDVVNEPFWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAK
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
LVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGLECHIRPHYTRNFDILAQFIA
EEEEHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
KVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR
HHHHCCEEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
>Mature Secondary Structure
MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIR
CEEEEEECCCCCCCCCHHHHHHHHHHCHHHCCCCEEEECCCHHCCCCCCCCHHHHHHHHH
YAGHRHTMKNLPQKLQIVRRAVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDV
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHEEEEEECCCCH
NEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFPDIPPHKVKTEWLGVSDFWFQ
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCC
PAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY
CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCC
DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYL
CCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCEEEE
EAGAQGLPSIAGNVGGMPEAVEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGAL
ECCCCCCCHHHCCCCCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH
ERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDITQPQNGLARRSVLGAFASVGL
HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHH
LKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF
HHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECHHHHH
KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHI
HHHHCCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHH
KEVMGRYRGRIHSWDVVNEPFWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAK
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
LVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGLECHIRPHYTRNFDILAQFIA
EEEEHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
KVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR
HHHHCCEEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3139632; 7664125 [H]