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The map label for this gene is ydhC [H]

Identifier: 182679170

GI number: 182679170

Start: 2532131

End: 2532802

Strand: Reverse

Name: ydhC [H]

Synonym: Bind_2208

Alternate gene names: 182679170

Gene position: 2532802-2532131 (Counterclockwise)

Preceding gene: 182679171

Following gene: 182679167

Centisome position: 60.74

GC content: 56.55

Gene sequence:

>672_bases
ATGGCCGAGCCCACTCCAATTTTCCGGCAGAGCCTGCATGATGTATTGACGCCGAGCCTGCGCCAATTGATCCTGGGCGG
CGAGTTGAAGCCAGGCGAGAAGATCCCCGAACGCCAGCTTTGCGAGCGTTTTGGTGTCTCGCGCACTCCCTTGCGGGAAG
CTCTCAAGGTGCTCGCCGCCGAGGGGTTGATCGAACTCTTGCCGCAGCGCGGGGCGATCGTCGCACAAATCAGCCCGGAA
GATATCGAGGAATTGTTTCCCATCATGGCGGCCCTTGAGGCCTTGGCGGGTGAACTCGCCTGCGAGCGTGCGACCGATGC
GGATATCGCCCAAGTTCGCGCCTTGCACGGTCAGATGATGGAGAGCTATCGAAACGGTGACGAAGACGATTATCTCCGCC
TCAATCGTCGCATTCATCAAACCATTTTTGATATAGCCCATAATGAAACGCTTGCGGCCATGTATCAGCAAATTCTGACA
CGCATGCACTCACACCGTTTCATTGTTCGCAAGAGCGAGGCAAACTGGAAGAGCGCCGTGGAAGAACATGAAAAGATCAT
GGAAGCGCTCGCCGCGCGCGATAAACGTCGGTTGCCCAGCTTATTGCGTAAGCATGTGACGGGAACAACCGTGAGGATCG
CCACGGAATCCGTTGAACGCACAAGGGTGTAG

Upstream 100 bases:

>100_bases
CATTCTTGATTCCCGCGTGGATGAGGCTAGATCAATTCCGTGCGAGCAGCATCGGCCGTCTCGTCATTTCAAACAACGGC
AGGAAACAGGACCGACGTCG

Downstream 100 bases:

>100_bases
CTTTAACTTGATTGTGCATTCTCATGACGAGCATTTGGCTCGTCATGAGAATGGTGAAGAATGTCGCTCTTTTCAGGGCA
ATATACTAATAGGCGTGACG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MAEPTPIFRQSLHDVLTPSLRQLILGGELKPGEKIPERQLCERFGVSRTPLREALKVLAAEGLIELLPQRGAIVAQISPE
DIEELFPIMAALEALAGELACERATDADIAQVRALHGQMMESYRNGDEDDYLRLNRRIHQTIFDIAHNETLAAMYQQILT
RMHSHRFIVRKSEANWKSAVEEHEKIMEALAARDKRRLPSLLRKHVTGTTVRIATESVERTRV

Sequences:

>Translated_223_residues
MAEPTPIFRQSLHDVLTPSLRQLILGGELKPGEKIPERQLCERFGVSRTPLREALKVLAAEGLIELLPQRGAIVAQISPE
DIEELFPIMAALEALAGELACERATDADIAQVRALHGQMMESYRNGDEDDYLRLNRRIHQTIFDIAHNETLAAMYQQILT
RMHSHRFIVRKSEANWKSAVEEHEKIMEALAARDKRRLPSLLRKHVTGTTVRIATESVERTRV
>Mature_222_residues
AEPTPIFRQSLHDVLTPSLRQLILGGELKPGEKIPERQLCERFGVSRTPLREALKVLAAEGLIELLPQRGAIVAQISPED
IEELFPIMAALEALAGELACERATDADIAQVRALHGQMMESYRNGDEDDYLRLNRRIHQTIFDIAHNETLAAMYQQILTR
MHSHRFIVRKSEANWKSAVEEHEKIMEALAARDKRRLPSLLRKHVTGTTVRIATESVERTRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=171, Percent_Identity=28.0701754385965, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789353, Length=178, Percent_Identity=29.2134831460674, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786303, Length=164, Percent_Identity=34.7560975609756, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI48994955, Length=206, Percent_Identity=27.1844660194175, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787821, Length=204, Percent_Identity=26.9607843137255, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87082149, Length=196, Percent_Identity=27.0408163265306, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25317; Mature: 25185

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPTPIFRQSLHDVLTPSLRQLILGGELKPGEKIPERQLCERFGVSRTPLREALKVLAA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
EGLIELLPQRGAIVAQISPEDIEELFPIMAALEALAGELACERATDADIAQVRALHGQMM
HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ESYRNGDEDDYLRLNRRIHQTIFDIAHNETLAAMYQQILTRMHSHRFIVRKSEANWKSAV
HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHH
EEHEKIMEALAARDKRRLPSLLRKHVTGTTVRIATESVERTRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEPTPIFRQSLHDVLTPSLRQLILGGELKPGEKIPERQLCERFGVSRTPLREALKVLAA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
EGLIELLPQRGAIVAQISPEDIEELFPIMAALEALAGELACERATDADIAQVRALHGQMM
HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ESYRNGDEDDYLRLNRRIHQTIFDIAHNETLAAMYQQILTRMHSHRFIVRKSEANWKSAV
HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHH
EEHEKIMEALAARDKRRLPSLLRKHVTGTTVRIATESVERTRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]