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The map label for this gene is yhgF [C]

Identifier: 182679167

GI number: 182679167

Start: 2526477

End: 2528777

Strand: Reverse

Name: yhgF [C]

Synonym: Bind_2205

Alternate gene names: 182679167

Gene position: 2528777-2526477 (Counterclockwise)

Preceding gene: 182679170

Following gene: 182679162

Centisome position: 60.64

GC content: 58.76

Gene sequence:

>2301_bases
ATGGCCACAGACACCAATCGCATTACCCGAACCATTGCCACCGAAATCCAGGCAAGACCGGAACAGGTGAAGGTCGCGAT
CTCCTTGCTCGACGAGGGCGCCACAGTTCCTTTCGTGGCGCGTTATCGTAAGGAGGCGACAGGCGGTCTCGATGATACTC
AATTGCGCCAACTCGAGGAACGTCTAGCCTATTTGCGTGAGCTTGAGGCACGGCGCCAAAGCATTAGCGAGTCGATCGCC
AATCAAGGCAAGCTCACCGACGAGATTGCCGGCAAAATTGCGGAAGCCGCCACAAAGGCCGAGCTTGAAGATATTTATCT
CCCGTATCGTCCGAAGCGCCGCACACGCGCGGAAATTGCCCGCGAGCGGGGTTTGGGAGTATTGGCCGAGGCCATCCTCG
CCGATCGCAAGGTGATCCCCGAGGAGCTGGCTTTGGCTTATCTGTCCGAGGATGTGCCGGATACCAAAACCGCGCTTGAA
GGGGCGCGTGATATTCTCACCGAAACTTTTGCCGAAAATGCGGATCTCGTCGGCCGGTTACGGAGCTATCTCCAGGGCCA
TGCGATGTTGCGCTCCCGCTTGGTGGAAGGCAAGGAGACCGCGGGCGAGAAATTCTCCGATTATTTCGACCATTGCGAAC
TTTGGTCGAAAGTACCGAGCCATCGCGCCTTGGCAATGCTGCGCGGCCGCAATGAAGATGTGCTTTCACTCTCCATCGAA
GTGGACGTGGATGATACATCGGCGATCAAGCCGGCTGAGCGCATGATTGCGGAAGCCTATGACATTCCTTTGCAGGGTGA
GCCAGCGGATATATGGCTTCTCGATATCGCGCGTTGGGCGTGGCGAGTTAAGCTATCTCTGCATTTGTCGCTCGATCTGA
TGAATGATTTGCGGGAGCGCGCGGAAAAGGAGGCCATTTTGGTTTTCGCCCGCAATCTCAAGGACCTCCTGCTCGCTGCA
CCCGCTGGCTCGCGGCCGACCATGGGGCTTGATCCGGGCATTCGCACGGGCGTGAAGGTCGCCGTGGTGGACGCGACGGG
GAAGCTTCTTGACACAGCGACCATTTATCCCTTTCAGCCGCGCAATGATGTGGTGGGCGCTATGGCCGAGCTTGGCCGGC
TGATCCGTAAACATGGCGTTGAATTGATCGCCATCGGCAATGGTACGGCTAGCCGTGAGACCGACCGTTTGGCGGCGGAT
GTGATTGCCTCGCTTCCCGGGCCGAAGCCGATCAAGGTCGTGGTCAGCGAGGCCGGGGCCTCGGTCTATTCGGCCTCGGC
ATTGGCCGCCGCTGAAATGCCCGATCTCGATGTGTCCCTCAGGGGCGCGGTCTCGATCGCGCGGCGTTTGCAGGATCCGC
TTGCCGAACTCGTCAAGATCGATCCGAAATCGATTGGCGTCGGTCAGTATCAGCATGATGTCAATCAGGCTTGGCTTGCC
CGCTCCCTGGATGCCGTTGTTGAAGACGCCGTGAACGCGGTGGGTGTCGATCTCAACACGGCCTCGGCCGCCTTGCTCTC
ACGTGTCTCCGGGCTCAGCACGTCGCTGGCCGATGCGATCATCGTCCATCGTGATCTGAAGGGGGCGTTTACAAATCGGC
GCGAACTTCTGGATGTGCATCGTCTCGGACCGCGCACCTTTGAACTCTGCGCCGGATTTTTACGAATCCCTCATGGCACG
GAGCCTTTGGACGCGGCCTCGGTTCACCCGGAAGCCTATGGCGTTGCCCGCAAGATCGTGGCGGCTTGCGGCCGGGATCT
TCGTTCCCTGATGGGTGATACGGCGACCTTGAAATCTCTCAATCCGGCTCAATTCGTGGACGAGCGTTTCGGTCTGCCGA
CCGTACGGGATATTTTGCTTGAACTTGAAAAACCCGGCCGTGATCCGCGCCCCGAATTCAAGACAGCGACCTTCGCCGAG
GGGATAGACGATATCAAGGACTTGAAACCAGGCATGACGCTGGAAGGCACGGTGACCAATGTCACCAATTTCGGCGCTTT
CGTCGATATTGGTGTTCATCAGGACGGGCTTGTTCATATATCGCAATTGGCCGACCGCTTCGTGAAGGAGCCCAATGATC
TGGTCAAGGCTGGTGATGTCGTAAAAGTGCGGGTCGTGGAAGTCGATGTGAAGCGCAAGCGCATCGCGCTTTCCATGCGA
ACACAGGAAGCCACACCCCAAAGCGCTCCTGCACGTGCCGGGCGTGGGAACAATCGGGAACAAGCGCGCCCGAAGGAGCA
GTCGGCATCCTCTCATGGCGCGCTTGGTGCCGCCTTGGCTGAGGCTATGCGGCGGCGGTAA

Upstream 100 bases:

>100_bases
TCTTCGTATCTACCTGTTTATACAAGGCTTATTATGGAAAACTTTGCAAGTTTTCGGAAATATGCTCTAGGGTGGCCTAT
CCCGAATCGATGAGACAGGC

Downstream 100 bases:

>100_bases
TCGAAGGTATGAGCGATGCCAGCGGTCATTCTTTACGGCCGCTGGCGATCGAGCTGTCATTCTGGCCAGCGCCAATGACG
GATCTCCGGCAAATCCTCGC

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 766; Mature: 765

Protein sequence:

>766_residues
MATDTNRITRTIATEIQARPEQVKVAISLLDEGATVPFVARYRKEATGGLDDTQLRQLEERLAYLRELEARRQSISESIA
NQGKLTDEIAGKIAEAATKAELEDIYLPYRPKRRTRAEIARERGLGVLAEAILADRKVIPEELALAYLSEDVPDTKTALE
GARDILTETFAENADLVGRLRSYLQGHAMLRSRLVEGKETAGEKFSDYFDHCELWSKVPSHRALAMLRGRNEDVLSLSIE
VDVDDTSAIKPAERMIAEAYDIPLQGEPADIWLLDIARWAWRVKLSLHLSLDLMNDLRERAEKEAILVFARNLKDLLLAA
PAGSRPTMGLDPGIRTGVKVAVVDATGKLLDTATIYPFQPRNDVVGAMAELGRLIRKHGVELIAIGNGTASRETDRLAAD
VIASLPGPKPIKVVVSEAGASVYSASALAAAEMPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQAWLA
RSLDAVVEDAVNAVGVDLNTASAALLSRVSGLSTSLADAIIVHRDLKGAFTNRRELLDVHRLGPRTFELCAGFLRIPHGT
EPLDAASVHPEAYGVARKIVAACGRDLRSLMGDTATLKSLNPAQFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFAE
GIDDIKDLKPGMTLEGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVRVVEVDVKRKRIALSMR
TQEATPQSAPARAGRGNNREQARPKEQSASSHGALGAALAEAMRRR

Sequences:

>Translated_766_residues
MATDTNRITRTIATEIQARPEQVKVAISLLDEGATVPFVARYRKEATGGLDDTQLRQLEERLAYLRELEARRQSISESIA
NQGKLTDEIAGKIAEAATKAELEDIYLPYRPKRRTRAEIARERGLGVLAEAILADRKVIPEELALAYLSEDVPDTKTALE
GARDILTETFAENADLVGRLRSYLQGHAMLRSRLVEGKETAGEKFSDYFDHCELWSKVPSHRALAMLRGRNEDVLSLSIE
VDVDDTSAIKPAERMIAEAYDIPLQGEPADIWLLDIARWAWRVKLSLHLSLDLMNDLRERAEKEAILVFARNLKDLLLAA
PAGSRPTMGLDPGIRTGVKVAVVDATGKLLDTATIYPFQPRNDVVGAMAELGRLIRKHGVELIAIGNGTASRETDRLAAD
VIASLPGPKPIKVVVSEAGASVYSASALAAAEMPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQAWLA
RSLDAVVEDAVNAVGVDLNTASAALLSRVSGLSTSLADAIIVHRDLKGAFTNRRELLDVHRLGPRTFELCAGFLRIPHGT
EPLDAASVHPEAYGVARKIVAACGRDLRSLMGDTATLKSLNPAQFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFAE
GIDDIKDLKPGMTLEGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVRVVEVDVKRKRIALSMR
TQEATPQSAPARAGRGNNREQARPKEQSASSHGALGAALAEAMRRR
>Mature_765_residues
ATDTNRITRTIATEIQARPEQVKVAISLLDEGATVPFVARYRKEATGGLDDTQLRQLEERLAYLRELEARRQSISESIAN
QGKLTDEIAGKIAEAATKAELEDIYLPYRPKRRTRAEIARERGLGVLAEAILADRKVIPEELALAYLSEDVPDTKTALEG
ARDILTETFAENADLVGRLRSYLQGHAMLRSRLVEGKETAGEKFSDYFDHCELWSKVPSHRALAMLRGRNEDVLSLSIEV
DVDDTSAIKPAERMIAEAYDIPLQGEPADIWLLDIARWAWRVKLSLHLSLDLMNDLRERAEKEAILVFARNLKDLLLAAP
AGSRPTMGLDPGIRTGVKVAVVDATGKLLDTATIYPFQPRNDVVGAMAELGRLIRKHGVELIAIGNGTASRETDRLAADV
IASLPGPKPIKVVVSEAGASVYSASALAAAEMPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQAWLAR
SLDAVVEDAVNAVGVDLNTASAALLSRVSGLSTSLADAIIVHRDLKGAFTNRRELLDVHRLGPRTFELCAGFLRIPHGTE
PLDAASVHPEAYGVARKIVAACGRDLRSLMGDTATLKSLNPAQFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFAEG
IDDIKDLKPGMTLEGTVTNVTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVRVVEVDVKRKRIALSMRT
QEATPQSAPARAGRGNNREQARPKEQSASSHGALGAALAEAMRRR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=768, Percent_Identity=32.6822916666667, Blast_Score=344, Evalue=2e-94,
Organism=Homo sapiens, GI27597090, Length=394, Percent_Identity=26.1421319796954, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI87082262, Length=758, Percent_Identity=61.4775725593668, Blast_Score=893, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=88, Percent_Identity=38.6363636363636, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI145693187, Length=82, Percent_Identity=46.3414634146341, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=717, Percent_Identity=29.1492329149233, Blast_Score=234, Evalue=9e-62,
Organism=Caenorhabditis elegans, GI17552892, Length=314, Percent_Identity=30.5732484076433, Blast_Score=89, Evalue=1e-17,
Organism=Drosophila melanogaster, GI62484314, Length=759, Percent_Identity=32.5428194993412, Blast_Score=347, Evalue=2e-95,
Organism=Drosophila melanogaster, GI24640080, Length=518, Percent_Identity=22.3938223938224, Blast_Score=88, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83506; Mature: 83375

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDTNRITRTIATEIQARPEQVKVAISLLDEGATVPFVARYRKEATGGLDDTQLRQLEE
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
RLAYLRELEARRQSISESIANQGKLTDEIAGKIAEAATKAELEDIYLPYRPKRRTRAEIA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RERGLGVLAEAILADRKVIPEELALAYLSEDVPDTKTALEGARDILTETFAENADLVGRL
HHHCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
RSYLQGHAMLRSRLVEGKETAGEKFSDYFDHCELWSKVPSHRALAMLRGRNEDVLSLSIE
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEE
VDVDDTSAIKPAERMIAEAYDIPLQGEPADIWLLDIARWAWRVKLSLHLSLDLMNDLRER
EECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEEEEEEEEEHHHHHHHHHH
AEKEAILVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAVVDATGKLLDTATIYPFQP
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCEECCCCC
RNDVVGAMAELGRLIRKHGVELIAIGNGTASRETDRLAADVIASLPGPKPIKVVVSEAGA
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
SVYSASALAAAEMPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQAWLA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RSLDAVVEDAVNAVGVDLNTASAALLSRVSGLSTSLADAIIVHRDLKGAFTNRRELLDVH
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGPRTFELCAGFLRIPHGTEPLDAASVHPEAYGVARKIVAACGRDLRSLMGDTATLKSL
HCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
NPAQFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFAEGIDDIKDLKPGMTLEGTVTN
CHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCEECC
VTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVRVVEVDVKRKRIALSMR
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEEEEEEEEEHHHHHHEEEEH
TQEATPQSAPARAGRGNNREQARPKEQSASSHGALGAALAEAMRRR
HCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ATDTNRITRTIATEIQARPEQVKVAISLLDEGATVPFVARYRKEATGGLDDTQLRQLEE
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
RLAYLRELEARRQSISESIANQGKLTDEIAGKIAEAATKAELEDIYLPYRPKRRTRAEIA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RERGLGVLAEAILADRKVIPEELALAYLSEDVPDTKTALEGARDILTETFAENADLVGRL
HHHCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
RSYLQGHAMLRSRLVEGKETAGEKFSDYFDHCELWSKVPSHRALAMLRGRNEDVLSLSIE
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEE
VDVDDTSAIKPAERMIAEAYDIPLQGEPADIWLLDIARWAWRVKLSLHLSLDLMNDLRER
EECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEEEEEEEEEHHHHHHHHHH
AEKEAILVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAVVDATGKLLDTATIYPFQP
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCEECCCCC
RNDVVGAMAELGRLIRKHGVELIAIGNGTASRETDRLAADVIASLPGPKPIKVVVSEAGA
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
SVYSASALAAAEMPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQAWLA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RSLDAVVEDAVNAVGVDLNTASAALLSRVSGLSTSLADAIIVHRDLKGAFTNRRELLDVH
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGPRTFELCAGFLRIPHGTEPLDAASVHPEAYGVARKIVAACGRDLRSLMGDTATLKSL
HCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
NPAQFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFAEGIDDIKDLKPGMTLEGTVTN
CHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCEECC
VTNFGAFVDIGVHQDGLVHISQLADRFVKEPNDLVKAGDVVKVRVVEVDVKRKRIALSMR
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEEEEEEEEEHHHHHHEEEEH
TQEATPQSAPARAGRGNNREQARPKEQSASSHGALGAALAEAMRRR
HCCCCCCCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]