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The map label for this gene is ygcF [C]

Identifier: 182679140

GI number: 182679140

Start: 2488160

End: 2488795

Strand: Direct

Name: ygcF [C]

Synonym: Bind_2177

Alternate gene names: 182679140

Gene position: 2488160-2488795 (Clockwise)

Preceding gene: 182679139

Following gene: 182679141

Centisome position: 59.67

GC content: 59.12

Gene sequence:

>636_bases
ATGAGCCATTACGCCGTAAAAGAAATTTTTCTGACCCTGCAAGGGGAAGGCGCGCAGGCTGGCCGCCCCGCCGTGTTCTG
CCGCTTCACCGGATGCAATCTCTGGTCTGGCCGGGAGGCCGACCGGGCTCAAGCGATCTGCCGTTTCTGCGACACGGATT
TCGTCGGCATGGACGGACTGGGCGGTGGACGTTTCGAGAGTGCGAGCTCCCTCGCGGATGCCATTGAAACCGCATGGACC
GCTGGTCCCGCGCATCGCTACGTGGTCTTTACAGGCGGCGAGCCCCTTTTGCAGCTCGATGAGACCTTAATCAAAGAAAT
CCATGCCCGGGGCTTCACCATCGCCGTGGAGACGAATGGCACGATCGCACCTCCCCCCGGGCTCGATTGGATCTGCGTCA
GCCCAAAGGCGGGGGCGCCTCTTAAAATCACTCAGGGCTCTGAATTGAAACTGGTGTTCCCCCAAGAGGCGCTCGATCCA
GAGGAATTTCGCGCCCTCTCCTTCCAACATTTCTGGCTTCAGCCTATGGATAACGCCAATCTGGCGCGAAACACCACGGA
AGCCACGGCCTATTGCCTTGCGCATCCGCAGTGGCGGCTCAGCCTGCAAACCCATAAATTGATTGGTATTCCATGA

Upstream 100 bases:

>100_bases
TGAAGAAATGGATTTCAGACGCGCTCTGATCCCTTTATTCATCACCGCGCTTGTGCAAAGGACCTCGCAAGAGGTCCTTT
TTGCTTTATAAACCGCTCCC

Downstream 100 bases:

>100_bases
AAATCACCCAAGCCTTTCATTTCGAGGCCGCCCATCGTTTGCCAAAAGTGCCGGAAGGCCATCGCTGCGCCAACTTGCAC
GGCCATTCCTACCGCGTCGA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGLGGGRFESASSLADAIETAWT
AGPAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETNGTIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDP
EEFRALSFQHFWLQPMDNANLARNTTEATAYCLAHPQWRLSLQTHKLIGIP

Sequences:

>Translated_211_residues
MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGLGGGRFESASSLADAIETAWT
AGPAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETNGTIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDP
EEFRALSFQHFWLQPMDNANLARNTTEATAYCLAHPQWRLSLQTHKLIGIP
>Mature_210_residues
SHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGLGGGRFESASSLADAIETAWTA
GPAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETNGTIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPE
EFRALSFQHFWLQPMDNANLARNTTEATAYCLAHPQWRLSLQTHKLIGIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23060; Mature: 22929

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGL
CCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
GGGRFESASSLADAIETAWTAGPAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETNG
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCC
TIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPEEFRALSFQHFWLQPMDNAN
EECCCCCCCEEEECCCCCCCEEEECCCEEEEECCHHCCCHHHHHEEEEEEEEECCCCCCC
LARNTTEATAYCLAHPQWRLSLQTHKLIGIP
CCCCCCHHEEEEEECCCEEEEEEEEEEECCC
>Mature Secondary Structure 
SHYAVKEIFLTLQGEGAQAGRPAVFCRFTGCNLWSGREADRAQAICRFCDTDFVGMDGL
CCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
GGGRFESASSLADAIETAWTAGPAHRYVVFTGGEPLLQLDETLIKEIHARGFTIAVETNG
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCC
TIAPPPGLDWICVSPKAGAPLKITQGSELKLVFPQEALDPEEFRALSFQHFWLQPMDNAN
EECCCCCCCEEEECCCCCCCEEEECCCEEEEECCHHCCCHHHHHEEEEEEEEECCCCCCC
LARNTTEATAYCLAHPQWRLSLQTHKLIGIP
CCCCCCHHEEEEEECCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]