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The map label for this gene is ycjZ [H]

Identifier: 182678742

GI number: 182678742

Start: 2005263

End: 2006156

Strand: Direct

Name: ycjZ [H]

Synonym: Bind_1771

Alternate gene names: 182678742

Gene position: 2005263-2006156 (Clockwise)

Preceding gene: 182678738

Following gene: 182678743

Centisome position: 48.09

GC content: 63.53

Gene sequence:

>894_bases
ATGCGACGCGAGGAACTGCTCGATCTGAATGCCTTCATGACGGTGGCCGAGGAACAGAGCTTCACCCGCGCCGCCGCTAA
GCTCGGCACTTCTCAATCGGCGCTGAGCCACACAATCCGGCGACTGGAAATGCGCCTTGGCGTGCGTCTGCTGACCCGGA
CCACCCGGAGCGTCGCGCCCACCGAGGCGGGCGAGCGGCTGCTCGGCACGCTGAGGCCGGCGCTCGACAGTATCGGCGCC
CAGCTCACGTCGCTCGGCGAACTGCGTGAGAAGCCGGCGGGGACAATTCGCATCACGACGTCGGAGCACGCGGCCGACAC
CACTCTTTGGCCCGCCCTCGAGAAGCTGCTTCCCGCCTATCCCGATATCCATGTCGAGCTGAGCCTCGACTCAGGGTTCG
CCGATATTGTGACGGAGCGGTTCGACGCCGGTGTTCGCCTGGGCGAGGCGCTCGCCAAAGATATGATTGCGACGCGGATC
GGCCCAGACCTGCGCATGGCAGTGGTCGGCTCGCCCGCTTATTTCCAGACGCGACCGATCCCGCAGACGCCGCAGAGCCT
AGCAGACCATCAGTGCATCAACCTGCGCATGCTGAGCTCCGGGGGTCTTTATGCCTGGGAATTGGAGAAGGATGGCCGCG
AGTTACGCGTGCGCGTCGAGGGGCAACTTGCCTTTAACAATGTAAACATGATTGTCCGCGCCGCCACAGCTGGATTCGGT
CTCGGCTTCGTGATGGAGGATCAGGTCACGGCGCATCTCGCGGACGGACGTTTGATCCGCGTGCTGGAAGACTGGTGTCC
ACCCTTCCCAGGCTACCACCTCTATTATCCAAGTCGGCGTCAGCCTTCGGCCGCATTCGCGGTGCTGGTTGAAGCACTAC
GCTATCGCGGGTGA

Upstream 100 bases:

>100_bases
CGTCGGTGACCTCTCCATCGCGGCAAGCCAACATTTAATCGTGAAGCATTTCGAGGATTAGCCGCTATAAACCGTATGGA
GTTATATCAGGAGTTCATGA

Downstream 100 bases:

>100_bases
TGGCTGCCGCGCGAGCAGCGGGGGCATTGTCTGGCAATCGTCATGATCGTGCGTGCGACAGCTCTCCGGTGGGACAACCT
CCTGCCACTACAGCTTGCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MRREELLDLNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAPTEAGERLLGTLRPALDSIGA
QLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAYPDIHVELSLDSGFADIVTERFDAGVRLGEALAKDMIATRI
GPDLRMAVVGSPAYFQTRPIPQTPQSLADHQCINLRMLSSGGLYAWELEKDGRELRVRVEGQLAFNNVNMIVRAATAGFG
LGFVMEDQVTAHLADGRLIRVLEDWCPPFPGYHLYYPSRRQPSAAFAVLVEALRYRG

Sequences:

>Translated_297_residues
MRREELLDLNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAPTEAGERLLGTLRPALDSIGA
QLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAYPDIHVELSLDSGFADIVTERFDAGVRLGEALAKDMIATRI
GPDLRMAVVGSPAYFQTRPIPQTPQSLADHQCINLRMLSSGGLYAWELEKDGRELRVRVEGQLAFNNVNMIVRAATAGFG
LGFVMEDQVTAHLADGRLIRVLEDWCPPFPGYHLYYPSRRQPSAAFAVLVEALRYRG
>Mature_297_residues
MRREELLDLNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAPTEAGERLLGTLRPALDSIGA
QLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAYPDIHVELSLDSGFADIVTERFDAGVRLGEALAKDMIATRI
GPDLRMAVVGSPAYFQTRPIPQTPQSLADHQCINLRMLSSGGLYAWELEKDGRELRVRVEGQLAFNNVNMIVRAATAGFG
LGFVMEDQVTAHLADGRLIRVLEDWCPPFPGYHLYYPSRRQPSAAFAVLVEALRYRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=54.5454545454545, Blast_Score=339, Evalue=1e-94,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=39.7260273972603, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=28.1786941580756, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786401, Length=274, Percent_Identity=27.3722627737226, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=29.4117647058824, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789639, Length=281, Percent_Identity=29.5373665480427, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=29.8969072164948, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788748, Length=122, Percent_Identity=38.5245901639344, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=26.1168384879725, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788706, Length=259, Percent_Identity=25.4826254826255, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787879, Length=169, Percent_Identity=33.7278106508876, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=36.1344537815126, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI145693105, Length=151, Percent_Identity=29.1390728476821, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=259, Percent_Identity=25.0965250965251, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788887, Length=150, Percent_Identity=37.3333333333333, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32813; Mature: 32813

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRREELLDLNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEAGERLLGTLRPALDSIGAQLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
PDIHVELSLDSGFADIVTERFDAGVRLGEALAKDMIATRIGPDLRMAVVGSPAYFQTRPI
CCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCC
PQTPQSLADHQCINLRMLSSGGLYAWELEKDGRELRVRVEGQLAFNNVNMIVRAATAGFG
CCCHHHHHCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEEECCCEEEEEEECCCCC
LGFVMEDQVTAHLADGRLIRVLEDWCPPFPGYHLYYPSRRQPSAAFAVLVEALRYRG
CCEEEECCHHEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRREELLDLNAFMTVAEEQSFTRAAAKLGTSQSALSHTIRRLEMRLGVRLLTRTTRSVAP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TEAGERLLGTLRPALDSIGAQLTSLGELREKPAGTIRITTSEHAADTTLWPALEKLLPAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
PDIHVELSLDSGFADIVTERFDAGVRLGEALAKDMIATRIGPDLRMAVVGSPAYFQTRPI
CCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCC
PQTPQSLADHQCINLRMLSSGGLYAWELEKDGRELRVRVEGQLAFNNVNMIVRAATAGFG
CCCHHHHHCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEEECCCEEEEEEECCCCC
LGFVMEDQVTAHLADGRLIRVLEDWCPPFPGYHLYYPSRRQPSAAFAVLVEALRYRG
CCEEEECCHHEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]