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The map label for this gene is yhdX [H]

Identifier: 182678576

GI number: 182678576

Start: 1806214

End: 1807389

Strand: Reverse

Name: yhdX [H]

Synonym: Bind_1601

Alternate gene names: 182678576

Gene position: 1807389-1806214 (Counterclockwise)

Preceding gene: 182678577

Following gene: 182678575

Centisome position: 43.34

GC content: 60.2

Gene sequence:

>1176_bases
ATGAGCCTGTCCGATCAATCCGCGACCGACCGCGCGACGCTCCTCGCCGTCTGGCGCGATCCACGTAAACGCGGTTTCAT
CGTACAGGCTCTTTTCGTGCTCGCGCTCTGCCTCGTGCTCGTCGGCATGTTCACGACGCTCCACGCCAATATGGTGGCGC
GCGGCATACCGACGGATTTCTCTTTCTGGAACCAGACCGCCGGTTTCGACATCAATCAAACACCCATCGCCTATTCGCCG
CTTTCGACCTATGGCCGGGCTTTTCTCGTTGGCCTCATCAATACATTGATCGTGGCGTCGATCGGTCTTGTCTGTACGAC
CATCATTGGGGTCATCGTAGGCATCTCGCGCCTGTCCAAAAACCGGCTCGTCTCTTTCCTGGCCGCGACTTATGTCGAAA
CCCTGCGCAACATCCCGCTGCTGCTGCAGCTCTTGTTCTGGTACAATGCGATCCTGAAGCCGCTGCCCGGGCCGCGCCAG
TCACTGCTCTTTCCCTTCGGCACCGTCCTCAACAATCGCGGTCTATTTCTGCCGCTGCCATCCTTGCTTCCGGGCGCGGC
ATGGGTCGGAGCCGCTTTGGCTCTTGGTTTGGCTGCCTCCTTCCTTGTGGGACGCGGCACGGCCCTGAAGCCTGGTTGGC
CCAAAACCCTTCTCTGTCTGGTTCTCGCCTTGGGGCCGGCGATCATTGCCGCCATGCTGGCACCGCCGCTCGCCTTCGAC
AGACCCATTCTGAAAGGGTTCAATTATACGGGCGGCTTCCGGGTCTTGCCGGAACTTGTGGCTCTGCTCCTCGGCTTGAG
CCTTTACACAGCCGCCTTCATCGCCGAAATCATTCGGGCGGGCATTATGGCCGTCCCACGGGGCCAGAGCGAAGCCGCCG
AGGCGCTCGGCTTGCCCTCTGGCCTCACGATGCGACGGATCATCCTGCCGCAAGCCCTGCGCGTCGTCATTCCGCCGCTC
ACCAGCCAATATCTCAATCTGATCAAGAACTCTTCCCTGGCCGTATTCATCGGCTATCCTGATCTCGTGCAGGTTTTCGC
CGGCACGGTGCTCAATCAGACGGGCGCTGCCGTGCAGATCATCTTCATCACCATGGCCGTCTATCTTGCTGTGTCGCTGG
TGACCTCGTTCGCCATGAATCTCATCAATCGCCGCATGGCGCTCGTGGAGCGATAG

Upstream 100 bases:

>100_bases
GCGAAGGCTCGAAACTGAAAATCAAGCGCGGCATCAACAATCTCTGGACGAAGGGCGGATTGCATTATGCGCCGCCGGTC
CGCTGATCCGGTCAAATAGC

Downstream 100 bases:

>100_bases
CCATGTCTGCTCATTCCTTCGCCCCCGGCAATTCCTATCTCCGGCAAGAAAGCGCGCCCCTTCTGCCGCCGCCAAAAGAT
CGAACCTCTCTTCTCGAGAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSLSDQSATDRATLLAVWRDPRKRGFIVQALFVLALCLVLVGMFTTLHANMVARGIPTDFSFWNQTAGFDINQTPIAYSP
LSTYGRAFLVGLINTLIVASIGLVCTTIIGVIVGISRLSKNRLVSFLAATYVETLRNIPLLLQLLFWYNAILKPLPGPRQ
SLLFPFGTVLNNRGLFLPLPSLLPGAAWVGAALALGLAASFLVGRGTALKPGWPKTLLCLVLALGPAIIAAMLAPPLAFD
RPILKGFNYTGGFRVLPELVALLLGLSLYTAAFIAEIIRAGIMAVPRGQSEAAEALGLPSGLTMRRIILPQALRVVIPPL
TSQYLNLIKNSSLAVFIGYPDLVQVFAGTVLNQTGAAVQIIFITMAVYLAVSLVTSFAMNLINRRMALVER

Sequences:

>Translated_391_residues
MSLSDQSATDRATLLAVWRDPRKRGFIVQALFVLALCLVLVGMFTTLHANMVARGIPTDFSFWNQTAGFDINQTPIAYSP
LSTYGRAFLVGLINTLIVASIGLVCTTIIGVIVGISRLSKNRLVSFLAATYVETLRNIPLLLQLLFWYNAILKPLPGPRQ
SLLFPFGTVLNNRGLFLPLPSLLPGAAWVGAALALGLAASFLVGRGTALKPGWPKTLLCLVLALGPAIIAAMLAPPLAFD
RPILKGFNYTGGFRVLPELVALLLGLSLYTAAFIAEIIRAGIMAVPRGQSEAAEALGLPSGLTMRRIILPQALRVVIPPL
TSQYLNLIKNSSLAVFIGYPDLVQVFAGTVLNQTGAAVQIIFITMAVYLAVSLVTSFAMNLINRRMALVER
>Mature_390_residues
SLSDQSATDRATLLAVWRDPRKRGFIVQALFVLALCLVLVGMFTTLHANMVARGIPTDFSFWNQTAGFDINQTPIAYSPL
STYGRAFLVGLINTLIVASIGLVCTTIIGVIVGISRLSKNRLVSFLAATYVETLRNIPLLLQLLFWYNAILKPLPGPRQS
LLFPFGTVLNNRGLFLPLPSLLPGAAWVGAALALGLAASFLVGRGTALKPGWPKTLLCLVLALGPAIIAAMLAPPLAFDR
PILKGFNYTGGFRVLPELVALLLGLSLYTAAFIAEIIRAGIMAVPRGQSEAAEALGLPSGLTMRRIILPQALRVVIPPLT
SQYLNLIKNSSLAVFIGYPDLVQVFAGTVLNQTGAAVQIIFITMAVYLAVSLVTSFAMNLINRRMALVER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=400, Percent_Identity=46.75, Blast_Score=329, Evalue=2e-91,
Organism=Escherichia coli, GI1786873, Length=130, Percent_Identity=36.9230769230769, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786874, Length=129, Percent_Identity=41.0852713178295, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788226, Length=129, Percent_Identity=37.2093023255814, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082239, Length=87, Percent_Identity=43.6781609195402, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787030, Length=221, Percent_Identity=30.316742081448, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787087, Length=140, Percent_Identity=30.7142857142857, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788645, Length=158, Percent_Identity=29.746835443038, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42013; Mature: 41882

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLSDQSATDRATLLAVWRDPRKRGFIVQALFVLALCLVLVGMFTTLHANMVARGIPTDF
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
SFWNQTAGFDINQTPIAYSPLSTYGRAFLVGLINTLIVASIGLVCTTIIGVIVGISRLSK
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRLVSFLAATYVETLRNIPLLLQLLFWYNAILKPLPGPRQSLLFPFGTVLNNRGLFLPLP
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECH
SLLPGAAWVGAALALGLAASFLVGRGTALKPGWPKTLLCLVLALGPAIIAAMLAPPLAFD
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
RPILKGFNYTGGFRVLPELVALLLGLSLYTAAFIAEIIRAGIMAVPRGQSEAAEALGLPS
CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC
GLTMRRIILPQALRVVIPPLTSQYLNLIKNSSLAVFIGYPDLVQVFAGTVLNQTGAAVQI
CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHH
IFITMAVYLAVSLVTSFAMNLINRRMALVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]