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The map label for this gene is yabD [H]

Identifier: 182678509

GI number: 182678509

Start: 1736580

End: 1737395

Strand: Reverse

Name: yabD [H]

Synonym: Bind_1533

Alternate gene names: 182678509

Gene position: 1737395-1736580 (Counterclockwise)

Preceding gene: 182678510

Following gene: 182678508

Centisome position: 41.66

GC content: 58.21

Gene sequence:

>816_bases
ATGCTGATCGATACCCATTGCCATCTTGATTTTCCCGATTTCGCGGCCGAGCGCGACGAGATTGTCGGCCGTGCGCGGGC
GGCGGGCCTTGGGCGTATGATCACTATTTCCACGCGTATCGATCGTTTCGCCGATATTCTGGCCATCGCCGAGACTTATC
ACGATGTCTATTGCACGGTCGGCACACATCCCATGCATGCGCATGAGGAGGAAGAAGTCGAGCTTGCCCGGCTGATCCAG
CTTTCCTCCCATGAAAAATGTATCGGCATCGGTGAAACGGGCCTCGATTATCATTATGACGACGCTCCGCGCGATCTCGC
GCAGCGGGTCTTTCGGACGCATATAGCAGCGGCGCGAGAAACCGGACTGCCGCTCGTCATTCATTCCCGCGACGCCGATG
CGGATATGGCCGATATTCTCACCGAGGAAATGGGCAAGGGCGCTTTCAAAGCCTTGCTGCATTGTTTTACGTCCTCGGCC
CAATTGGCCGAGACGGCACTCAAACTCGGCCTGTCTATTTCCTTTTCCGGCGTCCTGACGTTCAAGAAATCCGACGAATT
GCGCGCTATCGCCCGCGAAATCCCGATGGACCGCCTGCTTGTCGAGACGGACGCCCCCTATCTTGCTCCCGTCCCTTATC
GTGGCAAACGGAACGAGCCGGCCTATGTCGCAAAGACCGCGAAAATGCTGGCAGAGGTCAAGCAGGTTTCCGAACAGGAG
ATCGCCTCGGCAACGACCGCTAATGCCCTGCGGCTCTTCAGCAAAATGCCACCGCTTGCGGCAGCGGCTGGTCACGTAGA
CGGGCAGGCCGCATGA

Upstream 100 bases:

>100_bases
TCATCCATGTGGAAGAAGGCCCTGATCTGCCCCCCGGCACGGTTTTGCCGACACCTGTGCCGATCTTTCCCCGTATCGAA
ACGGAAGCCAAGTCATAGAC

Downstream 100 bases:

>100_bases
ATCGGCGGATCACCATTCTCGGCTGCGGCTCCTCTGGCGGCGTACCCAGGGTGGGGCAGGGGTGGGGCGCCTGCGATCCG
AACAATCCCAAAAACCGCCG

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MLIDTHCHLDFPDFAAERDEIVGRARAAGLGRMITISTRIDRFADILAIAETYHDVYCTVGTHPMHAHEEEEVELARLIQ
LSSHEKCIGIGETGLDYHYDDAPRDLAQRVFRTHIAAARETGLPLVIHSRDADADMADILTEEMGKGAFKALLHCFTSSA
QLAETALKLGLSISFSGVLTFKKSDELRAIAREIPMDRLLVETDAPYLAPVPYRGKRNEPAYVAKTAKMLAEVKQVSEQE
IASATTANALRLFSKMPPLAAAAGHVDGQAA

Sequences:

>Translated_271_residues
MLIDTHCHLDFPDFAAERDEIVGRARAAGLGRMITISTRIDRFADILAIAETYHDVYCTVGTHPMHAHEEEEVELARLIQ
LSSHEKCIGIGETGLDYHYDDAPRDLAQRVFRTHIAAARETGLPLVIHSRDADADMADILTEEMGKGAFKALLHCFTSSA
QLAETALKLGLSISFSGVLTFKKSDELRAIAREIPMDRLLVETDAPYLAPVPYRGKRNEPAYVAKTAKMLAEVKQVSEQE
IASATTANALRLFSKMPPLAAAAGHVDGQAA
>Mature_271_residues
MLIDTHCHLDFPDFAAERDEIVGRARAAGLGRMITISTRIDRFADILAIAETYHDVYCTVGTHPMHAHEEEEVELARLIQ
LSSHEKCIGIGETGLDYHYDDAPRDLAQRVFRTHIAAARETGLPLVIHSRDADADMADILTEEMGKGAFKALLHCFTSSA
QLAETALKLGLSISFSGVLTFKKSDELRAIAREIPMDRLLVETDAPYLAPVPYRGKRNEPAYVAKTAKMLAEVKQVSEQE
IASATTANALRLFSKMPPLAAAAGHVDGQAA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=28.7313432835821, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=30.0724637681159, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=28.7313432835821, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=28.4046692607004, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI225903424, Length=267, Percent_Identity=31.8352059925094, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI14042943, Length=263, Percent_Identity=24.3346007604563, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI225903439, Length=250, Percent_Identity=26, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=28.2608695652174, Blast_Score=83, Evalue=2e-16,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=39.453125, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=32.03125, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI48994985, Length=257, Percent_Identity=28.4046692607004, Blast_Score=115, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=279, Percent_Identity=30.1075268817204, Blast_Score=132, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=30.9701492537313, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17565396, Length=226, Percent_Identity=30.9734513274336, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=294, Percent_Identity=27.891156462585, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24648690, Length=283, Percent_Identity=29.6819787985866, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI221330018, Length=271, Percent_Identity=27.6752767527675, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24586117, Length=271, Percent_Identity=27.6752767527675, Blast_Score=87, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29666; Mature: 29666

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDTHCHLDFPDFAAERDEIVGRARAAGLGRMITISTRIDRFADILAIAETYHDVYCTV
CEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEE
GTHPMHAHEEEEVELARLIQLSSHEKCIGIGETGLDYHYDDAPRDLAQRVFRTHIAAARE
CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TGLPLVIHSRDADADMADILTEEMGKGAFKALLHCFTSSAQLAETALKLGLSISFSGVLT
CCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEEEEE
FKKSDELRAIAREIPMDRLLVETDAPYLAPVPYRGKRNEPAYVAKTAKMLAEVKQVSEQE
ECCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IASATTANALRLFSKMPPLAAAAGHVDGQAA
HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MLIDTHCHLDFPDFAAERDEIVGRARAAGLGRMITISTRIDRFADILAIAETYHDVYCTV
CEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEE
GTHPMHAHEEEEVELARLIQLSSHEKCIGIGETGLDYHYDDAPRDLAQRVFRTHIAAARE
CCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TGLPLVIHSRDADADMADILTEEMGKGAFKALLHCFTSSAQLAETALKLGLSISFSGVLT
CCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEEEEE
FKKSDELRAIAREIPMDRLLVETDAPYLAPVPYRGKRNEPAYVAKTAKMLAEVKQVSEQE
ECCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IASATTANALRLFSKMPPLAAAAGHVDGQAA
HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]