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The map label for this gene is omp2b [H]

Identifier: 182677621

GI number: 182677621

Start: 709626

End: 711215

Strand: Direct

Name: omp2b [H]

Synonym: Bind_0628

Alternate gene names: 182677621

Gene position: 709626-711215 (Clockwise)

Preceding gene: 182677620

Following gene: 182677622

Centisome position: 17.02

GC content: 53.4

Gene sequence:

>1590_bases
GTGACGGCGCTGCTCAAATACGAGTTTTTGTCGCTATTTTCCGAAGAAACGCCCATGTTTAACAATGTCTCACAGGTATT
TGGTCTCTCTTTCGGGGTCTCTGCAAGTCTCTTCGCCGCTGACTTTTCGATGGCGGCCGATTTGCCCTGGCACAAATCGG
CTCCTATGGAATATGTACGTGTTTGCGATGACTTTGGAGCCGGCTTTTTCTATCTTCCGGGCACGGAAACGTGCCTGAAG
GTGGGTGGCCTTGCCTTGACGGAAATGCGTCTTTTCGACCCTTCCTATAGTATTGGAGGAAATGGATTTTATGGCAACGG
AGTCGCACGCCCTGTTGGCGGCTATCTGCCTTCTCCATCACAATATACGAATGCTCGGTCTCGTGATGCTTACGGCTTCG
CAATTCTGGGCCGGGTGGAGCTTGATGCGCGTTCCAAAACCGAATGGGGCACGGTGCGAGCCTTCATGCGTGTCGATGCC
TATTACGGTTCAAGTCAGGGGGCCGCTTCCGGTGGCTTGGCGCAGGCTCCCAATACTTGGAACGGCTCTGCCGGAACGTC
CGCACCCCGTGAAACGACGACCGTCAACAAGGCCTTTATTCAATTTGCCGGTCTGACCGCGGGGCGAGCACAATCATTCT
TCGATTTCTATGCTGACGCCTACAATTTTGGTTCCATTCGGGGCTCCAACGCCACTGTCGCTCTTTTAGCCTATACGGCG
ACACTCCCTGATGGATGGTCGACATCAATATCATTAGAGGATCAGCCGTCAAGACGTGCCGCTATCGGAAGTACCATCGC
CGGCTATCAAGCCCAGCCAGCGGGAGTGCGGGTTCCTGATATTGTCGGCAGTTTCCGGCTGGATCGGAATTGGGGAGCTT
TTCAAGTTTCTGCCGCTGCGCATCAGGTGCGTGCCAGTCTTTTTCCATCGAGTGCTTTGGCAATACCTCCCGCGAGTTAT
GCCTTTCCGAGCTTGACTGCAAATGAATATGGCTTTGCGGTGCAGGGTGGTTTGATGATCAATGCCGATCAGATCGCGGC
GGGTGACAAATTTTGGTTGCAGGGCGCTTATGAGAAAGGTGCCTTTAGCTACATCGCGGGCAATAATTTTTCCTATTCCT
ACGGTGCTGTCAGCCAAAATCGCTACATGGGGTCCGGAATTTCCGCCATGGATAATTCGGTTGGATGGAATCCGGAGGTT
AATTCCGACTGTGTGTTTACCGGTAGTGGCTCTTGTGAGCGACAATGGGGCTGGGCCTTTGTCGGCGCTTACAAGCATTA
TTGGATACCAAGTTTGAGTTCTTCCCTTTTCACCTCCTATTTGGAGACCCATTATAGCGCTAACGCGCTTAATGGCCTTG
GTGGTGCTGTCGGTGTGGCCAATGCGAAGGAGACACGTGTCGGCACCAATCTCATTTGGACACCGCTGCGTGGCTTCGAT
ATTGGCGGCGAGTTTGCTTACATCAATCTTACCCAGACGCGGCCTGCGGGGCTCGCCTCGGATACGGCTTTAGTTGCCGC
CGGCCTGCCTGCCTTCAAGCCGAGCGTTAATACATATGAAACGCGTATTCGTGTTCAGCGCGCGTTCTAA

Upstream 100 bases:

>100_bases
TTTTCAGAGGCCTCCTAAACAAATAGAAGCGATCGTTTGCGTCTGAATCTGGTTCGACGCTGTAGGCCTCGTCAGTTACG
TTATCATAAAAATAAAATGC

Downstream 100 bases:

>100_bases
AATTTGTGATAGTCCGGTTCGGAGTTCCGGCATGAGCCATGATCCTCACACAGACTTGCAATCCGGCTTAGCCTCGATCC
TGACCTCGGCGCCGGTCGTT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 528

Protein sequence:

>529_residues
MTALLKYEFLSLFSEETPMFNNVSQVFGLSFGVSASLFAADFSMAADLPWHKSAPMEYVRVCDDFGAGFFYLPGTETCLK
VGGLALTEMRLFDPSYSIGGNGFYGNGVARPVGGYLPSPSQYTNARSRDAYGFAILGRVELDARSKTEWGTVRAFMRVDA
YYGSSQGAASGGLAQAPNTWNGSAGTSAPRETTTVNKAFIQFAGLTAGRAQSFFDFYADAYNFGSIRGSNATVALLAYTA
TLPDGWSTSISLEDQPSRRAAIGSTIAGYQAQPAGVRVPDIVGSFRLDRNWGAFQVSAAAHQVRASLFPSSALAIPPASY
AFPSLTANEYGFAVQGGLMINADQIAAGDKFWLQGAYEKGAFSYIAGNNFSYSYGAVSQNRYMGSGISAMDNSVGWNPEV
NSDCVFTGSGSCERQWGWAFVGAYKHYWIPSLSSSLFTSYLETHYSANALNGLGGAVGVANAKETRVGTNLIWTPLRGFD
IGGEFAYINLTQTRPAGLASDTALVAAGLPAFKPSVNTYETRIRVQRAF

Sequences:

>Translated_529_residues
MTALLKYEFLSLFSEETPMFNNVSQVFGLSFGVSASLFAADFSMAADLPWHKSAPMEYVRVCDDFGAGFFYLPGTETCLK
VGGLALTEMRLFDPSYSIGGNGFYGNGVARPVGGYLPSPSQYTNARSRDAYGFAILGRVELDARSKTEWGTVRAFMRVDA
YYGSSQGAASGGLAQAPNTWNGSAGTSAPRETTTVNKAFIQFAGLTAGRAQSFFDFYADAYNFGSIRGSNATVALLAYTA
TLPDGWSTSISLEDQPSRRAAIGSTIAGYQAQPAGVRVPDIVGSFRLDRNWGAFQVSAAAHQVRASLFPSSALAIPPASY
AFPSLTANEYGFAVQGGLMINADQIAAGDKFWLQGAYEKGAFSYIAGNNFSYSYGAVSQNRYMGSGISAMDNSVGWNPEV
NSDCVFTGSGSCERQWGWAFVGAYKHYWIPSLSSSLFTSYLETHYSANALNGLGGAVGVANAKETRVGTNLIWTPLRGFD
IGGEFAYINLTQTRPAGLASDTALVAAGLPAFKPSVNTYETRIRVQRAF
>Mature_528_residues
TALLKYEFLSLFSEETPMFNNVSQVFGLSFGVSASLFAADFSMAADLPWHKSAPMEYVRVCDDFGAGFFYLPGTETCLKV
GGLALTEMRLFDPSYSIGGNGFYGNGVARPVGGYLPSPSQYTNARSRDAYGFAILGRVELDARSKTEWGTVRAFMRVDAY
YGSSQGAASGGLAQAPNTWNGSAGTSAPRETTTVNKAFIQFAGLTAGRAQSFFDFYADAYNFGSIRGSNATVALLAYTAT
LPDGWSTSISLEDQPSRRAAIGSTIAGYQAQPAGVRVPDIVGSFRLDRNWGAFQVSAAAHQVRASLFPSSALAIPPASYA
FPSLTANEYGFAVQGGLMINADQIAAGDKFWLQGAYEKGAFSYIAGNNFSYSYGAVSQNRYMGSGISAMDNSVGWNPEVN
SDCVFTGSGSCERQWGWAFVGAYKHYWIPSLSSSLFTSYLETHYSANALNGLGGAVGVANAKETRVGTNLIWTPLRGFDI
GGEFAYINLTQTRPAGLASDTALVAAGLPAFKPSVNTYETRIRVQRAF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 56552; Mature: 56421

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALLKYEFLSLFSEETPMFNNVSQVFGLSFGVSASLFAADFSMAADLPWHKSAPMEYVR
CCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
VCDDFGAGFFYLPGTETCLKVGGLALTEMRLFDPSYSIGGNGFYGNGVARPVGGYLPSPS
HHHHCCCCEEECCCCHHHHHHCCEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCH
QYTNARSRDAYGFAILGRVELDARSKTEWGTVRAFMRVDAYYGSSQGAASGGLAQAPNTW
HHCCCCCCCCCCEEEEEEEEECCCCCCCHHHHEEEEEEEHHCCCCCCCCCCCCCCCCCCC
NGSAGTSAPRETTTVNKAFIQFAGLTAGRAQSFFDFYADAYNFGSIRGSNATVALLAYTA
CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEE
TLPDGWSTSISLEDQPSRRAAIGSTIAGYQAQPAGVRVPDIVGSFRLDRNWGAFQVSAAA
ECCCCCCCEEEECCCCCHHHHHCCHHCCCCCCCCCCCCHHHHCCEEECCCCCCEEEHHHH
HQVRASLFPSSALAIPPASYAFPSLTANEYGFAVQGGLMINADQIAAGDKFWLQGAYEKG
HHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEECCEEEEHHHHCCCCCEEEEECCCCC
AFSYIAGNNFSYSYGAVSQNRYMGSGISAMDNSVGWNPEVNSDCVFTGSGSCERQWGWAF
CEEEEECCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
VGAYKHYWIPSLSSSLFTSYLETHYSANALNGLGGAVGVANAKETRVGTNLIWTPLRGFD
EECHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCHHCCCCCEEEECCCCCC
IGGEFAYINLTQTRPAGLASDTALVAAGLPAFKPSVNTYETRIRVQRAF
CCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
TALLKYEFLSLFSEETPMFNNVSQVFGLSFGVSASLFAADFSMAADLPWHKSAPMEYVR
CCCHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
VCDDFGAGFFYLPGTETCLKVGGLALTEMRLFDPSYSIGGNGFYGNGVARPVGGYLPSPS
HHHHCCCCEEECCCCHHHHHHCCEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCH
QYTNARSRDAYGFAILGRVELDARSKTEWGTVRAFMRVDAYYGSSQGAASGGLAQAPNTW
HHCCCCCCCCCCEEEEEEEEECCCCCCCHHHHEEEEEEEHHCCCCCCCCCCCCCCCCCCC
NGSAGTSAPRETTTVNKAFIQFAGLTAGRAQSFFDFYADAYNFGSIRGSNATVALLAYTA
CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEE
TLPDGWSTSISLEDQPSRRAAIGSTIAGYQAQPAGVRVPDIVGSFRLDRNWGAFQVSAAA
ECCCCCCCEEEECCCCCHHHHHCCHHCCCCCCCCCCCCHHHHCCEEECCCCCCEEEHHHH
HQVRASLFPSSALAIPPASYAFPSLTANEYGFAVQGGLMINADQIAAGDKFWLQGAYEKG
HHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEECCEEEEHHHHCCCCCEEEEECCCCC
AFSYIAGNNFSYSYGAVSQNRYMGSGISAMDNSVGWNPEVNSDCVFTGSGSCERQWGWAF
CEEEEECCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
VGAYKHYWIPSLSSSLFTSYLETHYSANALNGLGGAVGVANAKETRVGTNLIWTPLRGFD
EECHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCHHCCCCCEEEECCCCCC
IGGEFAYINLTQTRPAGLASDTALVAAGLPAFKPSVNTYETRIRVQRAF
CCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]