Click here to switch to the map view.

The map label for this gene is yraN [C]

Identifier: 17547982

GI number: 17547982

Start: 3517744

End: 3518136

Strand: Reverse

Name: yraN [C]

Synonym: RSc3265

Alternate gene names: 17547982

Gene position: 3518136-3517744 (Counterclockwise)

Preceding gene: 17547984

Following gene: 17547981

Centisome position: 94.66

GC content: 72.01

Gene sequence:

>393_bases
ATGCACGCGCCGCAGCCCGCGCCTTCGCCGCCCGGCGCCGCCGCGACGGGCGAGGCCGCCGAAGACCGCGCGCTGCGCTA
CCTGCAGGCGCGGGGGCTGTCGGTCATTGCCCGCAATTATCGCTGCAAGACCGGCGAAATCGACCTGGTGATGCGCGATG
TGGCCGGTACGCTGGTGTTCGTCGAGGTGCGCGCTCGCGTGGCACGGTCGGCGCAGCGCTTCGGCGGCGCGGCCGCCAGC
GTGACGCCGGCCAAGCAACGCCGCCTGATCGCCGCGGCCGAGGATTTCCTCGCCGGCCATCCCGGCGAGGTGCCGGCCTG
CCGCTTCGATGTCATCGCCATCGACGGCACGCGCATTGAATGGATGCGCGATGCCTTCGGTGTCGAAGCCTGA

Upstream 100 bases:

>100_bases
ACATATAATGCGCCGGCGGGATAGTGCTGGTCATGCGCCAGCAGGGTCCAGTCAGGATCACTCACGAGAACTTCTCTTGG
TCAGTCGATTCAAACCGCAG

Downstream 100 bases:

>100_bases
GCTGGACCCGATTCACCCGATTCCTCCAACCCTTCCGGACTCCACAAGGACAGCATGAAACTCCCGTTGCCCACGTCTGC
CCGTCTCAAGCGCACCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MHAPQPAPSPPGAAATGEAAEDRALRYLQARGLSVIARNYRCKTGEIDLVMRDVAGTLVFVEVRARVARSAQRFGGAAAS
VTPAKQRRLIAAAEDFLAGHPGEVPACRFDVIAIDGTRIEWMRDAFGVEA

Sequences:

>Translated_130_residues
MHAPQPAPSPPGAAATGEAAEDRALRYLQARGLSVIARNYRCKTGEIDLVMRDVAGTLVFVEVRARVARSAQRFGGAAAS
VTPAKQRRLIAAAEDFLAGHPGEVPACRFDVIAIDGTRIEWMRDAFGVEA
>Mature_130_residues
MHAPQPAPSPPGAAATGEAAEDRALRYLQARGLSVIARNYRCKTGEIDLVMRDVAGTLVFVEVRARVARSAQRFGGAAAS
VTPAKQRRLIAAAEDFLAGHPGEVPACRFDVIAIDGTRIEWMRDAFGVEA

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=123, Percent_Identity=47.1544715447154, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3265_RALSO (Q8XUC6)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_521384.1
- ProteinModelPortal:   Q8XUC6
- GeneID:   1222129
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc3265
- NMPDR:   fig|267608.1.peg.3263
- HOGENOM:   HBG710155
- OMA:   QWLKNAF
- ProtClustDB:   PRK14673
- BioCyc:   RSOL267608:RSC3265-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13873; Mature: 13873

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPQPAPSPPGAAATGEAAEDRALRYLQARGLSVIARNYRCKTGEIDLVMRDVAGTLVF
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHEEHHCCCCCCCCCEEEEECCCCCEEH
VEVRARVARSAQRFGGAAASVTPAKQRRLIAAAEDFLAGHPGEVPACRFDVIAIDGTRIE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHH
WMRDAFGVEA
HHHHHCCCCC
>Mature Secondary Structure
MHAPQPAPSPPGAAATGEAAEDRALRYLQARGLSVIARNYRCKTGEIDLVMRDVAGTLVF
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHEEHHCCCCCCCCCEEEEECCCCCEEH
VEVRARVARSAQRFGGAAASVTPAKQRRLIAAAEDFLAGHPGEVPACRFDVIAIDGTRIE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHH
WMRDAFGVEA
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852