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The map label for this gene is rlpA [C]

Identifier: 17547984

GI number: 17547984

Start: 3519071

End: 3519775

Strand: Reverse

Name: rlpA [C]

Synonym: RSc3267

Alternate gene names: 17547984

Gene position: 3519775-3519071 (Counterclockwise)

Preceding gene: 17547988

Following gene: 17547982

Centisome position: 94.71

GC content: 72.91

Gene sequence:

>705_bases
ATGCTCAAGCTCACCCATCCGCTCCCCAGCCCTTCGGCCGGCCGCACGCTGCGTGCTTGGCTGCTGCACGGCGCCACCCT
GGTGGTGCTGGCGGGCTGTGCCGCCGTACCGGGCGAGCCGCCGGCCACGGCCACGAACGCCCCCGCGCACCCGGCCGATA
CGCGCGACAACCCCGATGCCTGGGGCACGCTGGCCTTCCGCGGCATGCCGGAATCCAGCAGCCTGCAGATGGCACCCGCC
GATACCGAGCCGGGCCTGCGCGCAGACCTCGGCACGTTCGAGCAGCGCGGTCTCGCGTCCTGGTACGGCCGCGGCTTCCA
CGGCCGGCGCACCGCCAGCGGCGAGCGCTTCGACATGAACGCCTTCACCGTCGCGCATCCGTCGCTGCCGCTGTCGAGCT
GGGTGCTGGTGCGCAACCTGTCCAACGACCGCGTTGTCGTCGCCAAGGTGACCGACCGCGGGCCGTATCACGGCAAGCGC
ATCATCGATCTGTCCTACGCCGCCGCCAAGCGGCTCGATTTCGTCCGGCGCGGCTCGACCCAGGTGGAAATCCGCCGCCT
GTCGCGCGCCGAGGTCGAGGCACTGCGCCCCGAGCTGACGCAGACCGACGTCGCCAGCAACAGCGGCGACGCCGACATGG
GCGCCGACGAACCCGCGCCGCCGCGCAAGAAGGCGGTCAAGCGCCGGGCCCGCGCGCGCCGCTAA

Upstream 100 bases:

>100_bases
CAAAACTTTTACAAAGTTGATGCAAGATGCCTGCGTGATCGCAGTGAATTGATAGGAAATGTAAATAGACGGTCGCAAAC
AGCATGGTAGACTCGCGCCC

Downstream 100 bases:

>100_bases
TCCCGTCCGTCGTTTTTCAGCGCCAGCGCGCTCTGGTACAACGCGTCGACCGGCGCGCCGGTGATCGCCCCGGCCAGCTT
GGCTGCGCGCTTGGCCGGCA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLKLTHPLPSPSAGRTLRAWLLHGATLVVLAGCAAVPGEPPATATNAPAHPADTRDNPDAWGTLAFRGMPESSSLQMAPA
DTEPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMNAFTVAHPSLPLSSWVLVRNLSNDRVVVAKVTDRGPYHGKR
IIDLSYAAAKRLDFVRRGSTQVEIRRLSRAEVEALRPELTQTDVASNSGDADMGADEPAPPRKKAVKRRARARR

Sequences:

>Translated_234_residues
MLKLTHPLPSPSAGRTLRAWLLHGATLVVLAGCAAVPGEPPATATNAPAHPADTRDNPDAWGTLAFRGMPESSSLQMAPA
DTEPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMNAFTVAHPSLPLSSWVLVRNLSNDRVVVAKVTDRGPYHGKR
IIDLSYAAAKRLDFVRRGSTQVEIRRLSRAEVEALRPELTQTDVASNSGDADMGADEPAPPRKKAVKRRARARR
>Mature_234_residues
MLKLTHPLPSPSAGRTLRAWLLHGATLVVLAGCAAVPGEPPATATNAPAHPADTRDNPDAWGTLAFRGMPESSSLQMAPA
DTEPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMNAFTVAHPSLPLSSWVLVRNLSNDRVVVAKVTDRGPYHGKR
IIDLSYAAAKRLDFVRRGSTQVEIRRLSRAEVEALRPELTQTDVASNSGDADMGADEPAPPRKKAVKRRARARR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=117, Percent_Identity=41.025641025641, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 25375; Mature: 25375

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLTHPLPSPSAGRTLRAWLLHGATLVVLAGCAAVPGEPPATATNAPAHPADTRDNPDA
CCEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
WGTLAFRGMPESSSLQMAPADTEPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMN
CEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCEEECC
AFTVAHPSLPLSSWVLVRNLSNDRVVVAKVTDRGPYHGKRIIDLSYAAAKRLDFVRRGST
EEEEECCCCCHHHEEEEEECCCCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCC
QVEIRRLSRAEVEALRPELTQTDVASNSGDADMGADEPAPPRKKAVKRRARARR
HHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKLTHPLPSPSAGRTLRAWLLHGATLVVLAGCAAVPGEPPATATNAPAHPADTRDNPDA
CCEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
WGTLAFRGMPESSSLQMAPADTEPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMN
CEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCEEECC
AFTVAHPSLPLSSWVLVRNLSNDRVVVAKVTDRGPYHGKRIIDLSYAAAKRLDFVRRGST
EEEEECCCCCHHHEEEEEECCCCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCC
QVEIRRLSRAEVEALRPELTQTDVASNSGDADMGADEPAPPRKKAVKRRARARR
HHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]