Click here to switch to the map view.

The map label for this gene is yncD [C]

Identifier: 17547641

GI number: 17547641

Start: 3151699

End: 3153798

Strand: Direct

Name: yncD [C]

Synonym: RSc2922

Alternate gene names: 17547641

Gene position: 3151699-3153798 (Clockwise)

Preceding gene: 17547639

Following gene: 17547643

Centisome position: 84.8

GC content: 70.33

Gene sequence:

>2100_bases
ATGAGAGCGCGGCCGGCCGGCGTGCTGTGGATGGCATTGGGATACGGCATGGCCGGCCCGCTGAGCGCGCTCGCGGGCGG
ACTCCAGCAGCCCGAGGTCCAGCTCGAGACGACCACCGTCGTCGGGTCCGCCGCCGCCGCGGCCGCCACCGGCGAAGCCG
CCAGCCAGGGCTATGTGCCGCGTGCCCAACTGGAGAACCGCCCCCTGCTGCGCCCCGGCGAACTGCTCGAGACCGTCCCC
GGCCTGATCGTCACGCAGCACAGCGGCGACGGCAAGGCCAACCAGTACTTCCTGCGCGGCTTCAATCTCGATCACGGCAC
CGATCTGGCCACCACGGTGGCCGGCATGCCGGTCAACATGCGCACGCACGCGCACGGCCAGGGCTACACCGATCTCAACT
TCCTCATCCCGGAACTGGTCAGCGGCATCGCCTACAAGAAAGGCACCTACTTCGCAGAGGAAGGCGACTTCTCGGCCGCC
GGCGCCGTCCGGATCGACTACGCCGACAAGCTGCCGCACGGCCTCGCCCAGTTCGAGCTGGGCGAATACGGCTACCGGCG
CGGCCTGCTCGCCGACTCGCGCGCGGTCGGGCCGGGCACGCTGCTGTACGGCTTCGAGTGGCTGGGCGAGAACGGCCCGT
GGGTCGTGCCGGAAGGCGTGCACAAGCTCAACGGCGTGCTGCGCTACACCCTGCCGCTGGGCGGCGGCGAGCGCGTCACC
GTGACGGGCATGGCCTACCGGAACACCTGGCAATCGACCGACCAGGTGCCGCAACGCGCCATCGACCAGGGCCTGATCGC
CCGCTTCGGCGCCATCGATCCGACCGACGGCGGCATGGCCTCGCGCTACAGCCTGTCGGCCGACTGGCTGCGCCCGCTGG
CCGACGGGCAGCTCAAGGCCAACGCCTACGTCATCAAGAGCCGGCTGACGCTGTTCTCGAATTTCACCTATGCGCTCGCC
AACCCCGTGCTGGGCGACCAGTTCGAGCAGTTCGAGAACCGGGTCACGACCGGCATCAACGCCTCGCGCACGTGGTTCGG
CGAGCTTGCCGGGCACGACAGCGAAACCGAGATCGGCTCGCAGACGCGCTACGACCGGCTCGACCCGATCCTGCTCGCCG
ACACGGTGGCGCGGCAGCCCTACGCGCTGGTCCGCAGCGACACCGTCGACGAGACCAGCACGGCGCTCTACCTGCGCAAC
AGCATCCAGTGGCGGCCCTGGCTGCGCACCCTCGCCGGCTTGCGCGCCGACCAGTTCTGGTACCGCGTCGGCAGCAGCAA
CCCGCGCAATTCGGGCAGCGGCGCCGAGCATATCGTCGCCCCCAAGCTGGGCGTGGTGCTGTCGCCGACGGCCAGGACCG
ACGTGTTCGTCAACTGGGGACGCGGCTACCACAGCAACGACGTGCGCGGCGCCACCACCACCGTCGATCCGGCCTCGGGC
AATCCGGTGCGCAAGGTCAGCGTGCTGGTGCCGGCCACCGGCTACGAGGTCGGCGTGCGGACGAAAGCGCTGGCGCGCGA
CCTGCAGCTGTCCGCCTCGCTGTGGCGGCTGGATATCGGCTCGGAGCTGGTGTTCGCCGGCGACACCGGCACCACGCAGC
CCAGCCGTCCCAGCCGGCGCACCGGCGTGGAGCTGGCGGCGTACTACAAGCCGTCGCCCGAGCTCATCCTCGACGCCGAT
GCCGCCTTCTCCCGCGCGCGCTTCCGCGATGCCGATCCGGCCGGCGACCACATCCCCGAGGCAATCCAGACCACCGCCTC
CGCGGGCATGTCGTGGACACACGGCCGCTGGACCCTCGGCGCCCGCCTGCGCTACTTCGGCCCGCGCCCCCTGATCGAAG
ACAACAGCGTGCGCTCGGCCTCGTCGTTCCTGGTCAACCTGAAGGCCGGCTATCGCGTGCGGAAGAACGTGCGCGTCTTC
GTCGAAGTGCTCAACGCGCTGAACCGCAAGGCCAACGACATCGACTACGACTACGCCTCGCTGCTCAAGGGAGAGACCTC
GCCGGTGGACGCCAGCGGCGCGGCAACCGGCATCAACGACCGGCACATCCACCCGGCCGAGCCGCGCACGGTGCGGGCCG
GCATCGCCTGGACGTTCTGA

Upstream 100 bases:

>100_bases
AGCGGGCACTGCCGCGGCGCGCGCCCGGCGGCATGAGGCTCGGCGGAAACCCATACACTTGGCACCCGCAAGAACACCAA
TGAGACGAGGGATGGGGACC

Downstream 100 bases:

>100_bases
CGGGCGCGGTGCCTCAGCGCGGATTCGGGAACCGGATCCGGAACTCGGTGAACTCGTGCTCGACCGATCGGCACGAAATG
CTGGCGCCCCAGCCGCGCAG

Product: outer membrane receptor signal peptide protein

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Receptor; Outer Membrane Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor; Outer Membrane Receptor Signal Peptide Protein; Iron Transport Outer Membrane Receptor; Outer Membrane Recepter Signal Peptide Protein; Outer Membrane Receptor For Iron Transport; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Cobalamin Transporter; NB-Dependent Receptor Plug Domain Protein

Number of amino acids: Translated: 699; Mature: 699

Protein sequence:

>699_residues
MRARPAGVLWMALGYGMAGPLSALAGGLQQPEVQLETTTVVGSAAAAAATGEAASQGYVPRAQLENRPLLRPGELLETVP
GLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVAGMPVNMRTHAHGQGYTDLNFLIPELVSGIAYKKGTYFAEEGDFSAA
GAVRIDYADKLPHGLAQFELGEYGYRRGLLADSRAVGPGTLLYGFEWLGENGPWVVPEGVHKLNGVLRYTLPLGGGERVT
VTGMAYRNTWQSTDQVPQRAIDQGLIARFGAIDPTDGGMASRYSLSADWLRPLADGQLKANAYVIKSRLTLFSNFTYALA
NPVLGDQFEQFENRVTTGINASRTWFGELAGHDSETEIGSQTRYDRLDPILLADTVARQPYALVRSDTVDETSTALYLRN
SIQWRPWLRTLAGLRADQFWYRVGSSNPRNSGSGAEHIVAPKLGVVLSPTARTDVFVNWGRGYHSNDVRGATTTVDPASG
NPVRKVSVLVPATGYEVGVRTKALARDLQLSASLWRLDIGSELVFAGDTGTTQPSRPSRRTGVELAAYYKPSPELILDAD
AAFSRARFRDADPAGDHIPEAIQTTASAGMSWTHGRWTLGARLRYFGPRPLIEDNSVRSASSFLVNLKAGYRVRKNVRVF
VEVLNALNRKANDIDYDYASLLKGETSPVDASGAATGINDRHIHPAEPRTVRAGIAWTF

Sequences:

>Translated_699_residues
MRARPAGVLWMALGYGMAGPLSALAGGLQQPEVQLETTTVVGSAAAAAATGEAASQGYVPRAQLENRPLLRPGELLETVP
GLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVAGMPVNMRTHAHGQGYTDLNFLIPELVSGIAYKKGTYFAEEGDFSAA
GAVRIDYADKLPHGLAQFELGEYGYRRGLLADSRAVGPGTLLYGFEWLGENGPWVVPEGVHKLNGVLRYTLPLGGGERVT
VTGMAYRNTWQSTDQVPQRAIDQGLIARFGAIDPTDGGMASRYSLSADWLRPLADGQLKANAYVIKSRLTLFSNFTYALA
NPVLGDQFEQFENRVTTGINASRTWFGELAGHDSETEIGSQTRYDRLDPILLADTVARQPYALVRSDTVDETSTALYLRN
SIQWRPWLRTLAGLRADQFWYRVGSSNPRNSGSGAEHIVAPKLGVVLSPTARTDVFVNWGRGYHSNDVRGATTTVDPASG
NPVRKVSVLVPATGYEVGVRTKALARDLQLSASLWRLDIGSELVFAGDTGTTQPSRPSRRTGVELAAYYKPSPELILDAD
AAFSRARFRDADPAGDHIPEAIQTTASAGMSWTHGRWTLGARLRYFGPRPLIEDNSVRSASSFLVNLKAGYRVRKNVRVF
VEVLNALNRKANDIDYDYASLLKGETSPVDASGAATGINDRHIHPAEPRTVRAGIAWTF
>Mature_699_residues
MRARPAGVLWMALGYGMAGPLSALAGGLQQPEVQLETTTVVGSAAAAAATGEAASQGYVPRAQLENRPLLRPGELLETVP
GLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVAGMPVNMRTHAHGQGYTDLNFLIPELVSGIAYKKGTYFAEEGDFSAA
GAVRIDYADKLPHGLAQFELGEYGYRRGLLADSRAVGPGTLLYGFEWLGENGPWVVPEGVHKLNGVLRYTLPLGGGERVT
VTGMAYRNTWQSTDQVPQRAIDQGLIARFGAIDPTDGGMASRYSLSADWLRPLADGQLKANAYVIKSRLTLFSNFTYALA
NPVLGDQFEQFENRVTTGINASRTWFGELAGHDSETEIGSQTRYDRLDPILLADTVARQPYALVRSDTVDETSTALYLRN
SIQWRPWLRTLAGLRADQFWYRVGSSNPRNSGSGAEHIVAPKLGVVLSPTARTDVFVNWGRGYHSNDVRGATTTVDPASG
NPVRKVSVLVPATGYEVGVRTKALARDLQLSASLWRLDIGSELVFAGDTGTTQPSRPSRRTGVELAAYYKPSPELILDAD
AAFSRARFRDADPAGDHIPEAIQTTASAGMSWTHGRWTLGARLRYFGPRPLIEDNSVRSASSFLVNLKAGYRVRKNVRVF
VEVLNALNRKANDIDYDYASLLKGETSPVDASGAATGINDRHIHPAEPRTVRAGIAWTF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75827; Mature: 75827

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARPAGVLWMALGYGMAGPLSALAGGLQQPEVQLETTTVVGSAAAAAATGEAASQGYVP
CCCCCCCEEEEHHHCCCCCHHHHHHCCCCCCCEEEEEEEEECCHHHHHHCCCHHHCCCCC
RAQLENRPLLRPGELLETVPGLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVAGMPVNM
HHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEE
RTHAHGQGYTDLNFLIPELVSGIAYKKGTYFAEEGDFSAAGAVRIDYADKLPHGLAQFEL
EECCCCCCCCHHHHHHHHHHHHHEECCCCEEECCCCCCCCCEEEEECHHHCCCCHHHHHH
GEYGYRRGLLADSRAVGPGTLLYGFEWLGENGPWVVPEGVHKLNGVLRYTLPLGGGERVT
HHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCHHHHHCCEEEEEEECCCCCEEE
VTGMAYRNTWQSTDQVPQRAIDQGLIARFGAIDPTDGGMASRYSLSADWLRPLADGQLKA
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHCCCCCEEC
NAYVIKSRLTLFSNFTYALANPVLGDQFEQFENRVTTGINASRTWFGELAGHDSETEIGS
CEEEEEHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
QTRYDRLDPILLADTVARQPYALVRSDTVDETSTALYLRNSIQWRPWLRTLAGLRADQFW
CCCHHCCCCEEEHHHHCCCCEEEEECCCCCCHHEEEEEECCCCCCHHHHHHHCCCHHHHH
YRVGSSNPRNSGSGAEHIVAPKLGVVLSPTARTDVFVNWGRGYHSNDVRGATTTVDPASG
EECCCCCCCCCCCCCCEEECCCCCEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCC
NPVRKVSVLVPATGYEVGVRTKALARDLQLSASLWRLDIGSELVFAGDTGTTQPSRPSRR
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCCCCC
TGVELAAYYKPSPELILDADAAFSRARFRDADPAGDHIPEAIQTTASAGMSWTHGRWTLG
CCCEEEEEECCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEC
ARLRYFGPRPLIEDNSVRSASSFLVNLKAGYRVRKNVRVFVEVLNALNRKANDIDYDYAS
CEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHH
LLKGETSPVDASGAATGINDRHIHPAEPRTVRAGIAWTF
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEECC
>Mature Secondary Structure
MRARPAGVLWMALGYGMAGPLSALAGGLQQPEVQLETTTVVGSAAAAAATGEAASQGYVP
CCCCCCCEEEEHHHCCCCCHHHHHHCCCCCCCEEEEEEEEECCHHHHHHCCCHHHCCCCC
RAQLENRPLLRPGELLETVPGLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVAGMPVNM
HHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHCCCCEEE
RTHAHGQGYTDLNFLIPELVSGIAYKKGTYFAEEGDFSAAGAVRIDYADKLPHGLAQFEL
EECCCCCCCCHHHHHHHHHHHHHEECCCCEEECCCCCCCCCEEEEECHHHCCCCHHHHHH
GEYGYRRGLLADSRAVGPGTLLYGFEWLGENGPWVVPEGVHKLNGVLRYTLPLGGGERVT
HHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCHHHHHCCEEEEEEECCCCCEEE
VTGMAYRNTWQSTDQVPQRAIDQGLIARFGAIDPTDGGMASRYSLSADWLRPLADGQLKA
EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHCCCCCEEC
NAYVIKSRLTLFSNFTYALANPVLGDQFEQFENRVTTGINASRTWFGELAGHDSETEIGS
CEEEEEHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
QTRYDRLDPILLADTVARQPYALVRSDTVDETSTALYLRNSIQWRPWLRTLAGLRADQFW
CCCHHCCCCEEEHHHHCCCCEEEEECCCCCCHHEEEEEECCCCCCHHHHHHHCCCHHHHH
YRVGSSNPRNSGSGAEHIVAPKLGVVLSPTARTDVFVNWGRGYHSNDVRGATTTVDPASG
EECCCCCCCCCCCCCCEEECCCCCEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCC
NPVRKVSVLVPATGYEVGVRTKALARDLQLSASLWRLDIGSELVFAGDTGTTQPSRPSRR
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCCCCCC
TGVELAAYYKPSPELILDADAAFSRARFRDADPAGDHIPEAIQTTASAGMSWTHGRWTLG
CCCEEEEEECCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEC
ARLRYFGPRPLIEDNSVRSASSFLVNLKAGYRVRKNVRVFVEVLNALNRKANDIDYDYAS
CEEEECCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHH
LLKGETSPVDASGAATGINDRHIHPAEPRTVRAGIAWTF
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA