| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is fct [H]
Identifier: 17547639
GI number: 17547639
Start: 3146828
End: 3149233
Strand: Direct
Name: fct [H]
Synonym: RSc2920
Alternate gene names: 17547639
Gene position: 3146828-3149233 (Clockwise)
Preceding gene: 17547638
Following gene: 17547641
Centisome position: 84.67
GC content: 69.87
Gene sequence:
>2406_bases GTGAATCGACATCGCCGACCGGTACGCCAGTCCCGCGCGCCGCGCCCGGGCGCGCTGGCCGCCGCCGCGCTATTTGCCAG CACCGCCATCGCGCAATCGCGCATGGTCATCGACATTCCCGCCGAGCCGCTCGATGCGGCGCTGAACACGCTGGCGCGGC AGGCGGGCACCCAGCTCGTGTTCGCCAGCGCGCTGACGGCCGGCAAGACCGCGCCGCACGTGCAGGGTCACTACAGCGTC GAGGAGACCCTGAACCGCCTGCTGGCGCAGAGCGGGCTGACGGCGCGCCGGCAGGGCGACAACACCTTCACCATCGAGCC GGCCGGCAGCGGCGCCGAAGTCACCCTGCCGGCCACCGTCACCACCGCCGCGCAGGCCGAATCCGCCAACGGCCCGGTGC ACGGCTACGTCGCCCGGCGCAGCGCGACCGGCACCAAGACCGATGCGCCGATCGAAGAGATTCCGCAGTCGATCAGCGTG GTGACGCGCGACCGCTTCGAAGCCCAGGGCGCGCAGAGCGTCAACGAGGCCCTGCGGTATACGGCATCGGTATCGACCTA CGGCGCGGGCACCCGCTCGGACTGGTACACCGCCGTGCGCGGCTTCGTGCCGGCCACCTACCTGGACGGCCTGCAGTTGC CCAACACCATCAACCTGGCCAGCTGGCGCGTCGACCCGTGGCAGATCGAGTGCGTCGAGCTGCTGCGGGGACCGGCTTCC GTGCTGTACGGCCAGGGCGACCCGGGCGGCACCGTCAACGTCGTCACCAAGCAGCCGACCGCCGAGCCCATCCGCGAGAT CGAGGTGCAATACGGCAGCCATGTGCGCAAGCAGGTGGCCGGCGATTTCGGCGGCGCGCTCGATGCCGACGGCAAGCTGT CGTACCGACTGACCGCCCTGGCGCGCGACGGCAACCTGCCGCTGGGGCCGTTCAACGACCAGCGCCTGATGATCGCGCCG TCGCTGACCTGGAAGCCGTCGGCCGACACCACGCTGACGCTGCTGGCAAACTACCTGCGCGACAAGACCAATGCGTCGGA CAGCTTCCTGCCGGCGCAGGGCACCATCCTGCCGAACCCGAACGGCAAGATTCCCGCCACCCGCTTCACCGGCTCGCCGG ATTTCGACGCGTACGAGAAGACGCAGTATTCGCTGGGCTACCAGTTCGAGCATCGCCTGGACGACACCTGGACGGTACGC CAGAACGCGCGCTACATGCACCTCAGGCTCGACGACCGCATGACCTACGGTGTCGGCCTGGACCCGAGCGACCCGACGCA GCGCACCCTGCTGCGCTACGCCGGCATCGCGCAGCCGAGCTACGGGCGGCTGGACATCGACACGCAGGCGCAGGCCCGGT TCGCCACCGGCATGGTGCGGCACACGCTGCTGGCCGGCGTCGACTACCAGCGCCAGACCACCAGGGACCCGGAGAACTAC GCGCTCACCTCGTCGCTTGACCTTTACAACCCGGTGTATCAGCCGACCGACCGGTCGATCTTCAGCGGCCCGGGCGCATC GCCGCAGGACATCCGCCAGCGGCAGACCCAGTTGGGCCTCTATCTACAGGACCAGCTCAAGCTGGGCGAGCGCTGGGTCT TCACGCTGGGCGGCCGACACGACTGGGCCGACACGCGCACCGACGACCTGCTCGGCGGCACCACCGCCAGCCAGCGCGAT GCCGCCTTCACCGGGCGCGTGGGCGTGGTGTACCTGGCGCCGTACGGCATCTCGCCGTACCTGAGCTATTCGACCTCGTT CAACCCGACCGTCGGCACCGACCGCAACGGCCAGGCCTTCAAGCCGACCAAGGGCCGGCAAGTCGAGGCCGGGGTGAAGG TCCAGGCCGGCAGCAAGGCGTCGGTCACGGCATCGGTCTTCCGGATCCACCAGCGCAACGTGCTGACGCCCGACCTGGAC GATCCGGCCGGCACGCACAGCACGCAGACCGGCGAGGTGCGCTCGCAGGGCTTCGAGCTGGAAGCCACCGTGCAGCCGAT GGCGGGCTGGAACGTGATTGCCGGCTACATCTACCAAGACGTGCGCAACACCCGCGCCAACGACGCCTCGCTCGACAAAT GGCCGATCGCCATCCCCACCCCGCGCCAGATCGCCTCGCTGTGGACGGACTACCGCATCCGCTCGGGCGTGCTGCAGGGC GTGGGCATCGGCGCCGGCGTGCGCTACGTCAGCCCCACGGCTGGCGCGCCGGACAACGCGCTGCGCGTGCCCGGCTATGC GCTGTTCGACGCGGCCATCTTCTACAGCGCCGGCCGCCATTGGCGCCTGGCGCTCAACGGCACCAACCTGGCCAACCGCG AAGTCATCTCCGGCTGCTATGACGCCACGCGGTGCATCTACGCCAACGGCCGCACCGTGCTCGCGACCGCGAAATACGCC TGGTAG
Upstream 100 bases:
>100_bases GCGCATCGCGCTGACCACCGGCGCCGCCGAGGTAGGGGTGCGCGGCGCCCCGCCCGTCTACTTCCCTGTGACCTAGACCA ACAAACGGGGAGCCTTCACA
Downstream 100 bases:
>100_bases CGTCGCTGCCGCAAAAGCAGACGGGCCGTGCGCAGTGCACGGCCCGTCCGCCCGGCCCGATGCAGGCGCGCGGCTCAGTC GCCCAGCGCCACCCCTTCGC
Product: hydroxamate-type ferrisiderophore receptor signal peptide protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MNRHRRPVRQSRAPRPGALAAAALFASTAIAQSRMVIDIPAEPLDAALNTLARQAGTQLVFASALTAGKTAPHVQGHYSV EETLNRLLAQSGLTARRQGDNTFTIEPAGSGAEVTLPATVTTAAQAESANGPVHGYVARRSATGTKTDAPIEEIPQSISV VTRDRFEAQGAQSVNEALRYTASVSTYGAGTRSDWYTAVRGFVPATYLDGLQLPNTINLASWRVDPWQIECVELLRGPAS VLYGQGDPGGTVNVVTKQPTAEPIREIEVQYGSHVRKQVAGDFGGALDADGKLSYRLTALARDGNLPLGPFNDQRLMIAP SLTWKPSADTTLTLLANYLRDKTNASDSFLPAQGTILPNPNGKIPATRFTGSPDFDAYEKTQYSLGYQFEHRLDDTWTVR QNARYMHLRLDDRMTYGVGLDPSDPTQRTLLRYAGIAQPSYGRLDIDTQAQARFATGMVRHTLLAGVDYQRQTTRDPENY ALTSSLDLYNPVYQPTDRSIFSGPGASPQDIRQRQTQLGLYLQDQLKLGERWVFTLGGRHDWADTRTDDLLGGTTASQRD AAFTGRVGVVYLAPYGISPYLSYSTSFNPTVGTDRNGQAFKPTKGRQVEAGVKVQAGSKASVTASVFRIHQRNVLTPDLD DPAGTHSTQTGEVRSQGFELEATVQPMAGWNVIAGYIYQDVRNTRANDASLDKWPIAIPTPRQIASLWTDYRIRSGVLQG VGIGAGVRYVSPTAGAPDNALRVPGYALFDAAIFYSAGRHWRLALNGTNLANREVISGCYDATRCIYANGRTVLATAKYA W
Sequences:
>Translated_801_residues MNRHRRPVRQSRAPRPGALAAAALFASTAIAQSRMVIDIPAEPLDAALNTLARQAGTQLVFASALTAGKTAPHVQGHYSV EETLNRLLAQSGLTARRQGDNTFTIEPAGSGAEVTLPATVTTAAQAESANGPVHGYVARRSATGTKTDAPIEEIPQSISV VTRDRFEAQGAQSVNEALRYTASVSTYGAGTRSDWYTAVRGFVPATYLDGLQLPNTINLASWRVDPWQIECVELLRGPAS VLYGQGDPGGTVNVVTKQPTAEPIREIEVQYGSHVRKQVAGDFGGALDADGKLSYRLTALARDGNLPLGPFNDQRLMIAP SLTWKPSADTTLTLLANYLRDKTNASDSFLPAQGTILPNPNGKIPATRFTGSPDFDAYEKTQYSLGYQFEHRLDDTWTVR QNARYMHLRLDDRMTYGVGLDPSDPTQRTLLRYAGIAQPSYGRLDIDTQAQARFATGMVRHTLLAGVDYQRQTTRDPENY ALTSSLDLYNPVYQPTDRSIFSGPGASPQDIRQRQTQLGLYLQDQLKLGERWVFTLGGRHDWADTRTDDLLGGTTASQRD AAFTGRVGVVYLAPYGISPYLSYSTSFNPTVGTDRNGQAFKPTKGRQVEAGVKVQAGSKASVTASVFRIHQRNVLTPDLD DPAGTHSTQTGEVRSQGFELEATVQPMAGWNVIAGYIYQDVRNTRANDASLDKWPIAIPTPRQIASLWTDYRIRSGVLQG VGIGAGVRYVSPTAGAPDNALRVPGYALFDAAIFYSAGRHWRLALNGTNLANREVISGCYDATRCIYANGRTVLATAKYA W >Mature_801_residues MNRHRRPVRQSRAPRPGALAAAALFASTAIAQSRMVIDIPAEPLDAALNTLARQAGTQLVFASALTAGKTAPHVQGHYSV EETLNRLLAQSGLTARRQGDNTFTIEPAGSGAEVTLPATVTTAAQAESANGPVHGYVARRSATGTKTDAPIEEIPQSISV VTRDRFEAQGAQSVNEALRYTASVSTYGAGTRSDWYTAVRGFVPATYLDGLQLPNTINLASWRVDPWQIECVELLRGPAS VLYGQGDPGGTVNVVTKQPTAEPIREIEVQYGSHVRKQVAGDFGGALDADGKLSYRLTALARDGNLPLGPFNDQRLMIAP SLTWKPSADTTLTLLANYLRDKTNASDSFLPAQGTILPNPNGKIPATRFTGSPDFDAYEKTQYSLGYQFEHRLDDTWTVR QNARYMHLRLDDRMTYGVGLDPSDPTQRTLLRYAGIAQPSYGRLDIDTQAQARFATGMVRHTLLAGVDYQRQTTRDPENY ALTSSLDLYNPVYQPTDRSIFSGPGASPQDIRQRQTQLGLYLQDQLKLGERWVFTLGGRHDWADTRTDDLLGGTTASQRD AAFTGRVGVVYLAPYGISPYLSYSTSFNPTVGTDRNGQAFKPTKGRQVEAGVKVQAGSKASVTASVFRIHQRNVLTPDLD DPAGTHSTQTGEVRSQGFELEATVQPMAGWNVIAGYIYQDVRNTRANDASLDKWPIAIPTPRQIASLWTDYRIRSGVLQG VGIGAGVRYVSPTAGAPDNALRVPGYALFDAAIFYSAGRHWRLALNGTNLANREVISGCYDATRCIYANGRTVLATAKYA W
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=743, Percent_Identity=37.4158815612382, Blast_Score=420, Evalue=1e-118, Organism=Escherichia coli, GI1787024, Length=702, Percent_Identity=24.3589743589744, Blast_Score=137, Evalue=4e-33, Organism=Escherichia coli, GI1787344, Length=738, Percent_Identity=24.9322493224932, Blast_Score=132, Evalue=1e-31, Organism=Escherichia coli, GI1790743, Length=834, Percent_Identity=23.621103117506, Blast_Score=91, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87072; Mature: 87072
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRHRRPVRQSRAPRPGALAAAALFASTAIAQSRMVIDIPAEPLDAALNTLARQAGTQLV CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCEEE FASALTAGKTAPHVQGHYSVEETLNRLLAQSGLTARRQGDNTFTIEPAGSGAEVTLPATV EEHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCEEEECEEE TTAAQAESANGPVHGYVARRSATGTKTDAPIEEIPQSISVVTRDRFEAQGAQSVNEALRY EEHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH TASVSTYGAGTRSDWYTAVRGFVPATYLDGLQLPNTINLASWRVDPWQIECVELLRGPAS HHCCEECCCCCCCHHHHHHHHCCCHHHHCCCCCCCEECEEEECCCCHHHHHHHHHCCCCC VLYGQGDPGGTVNVVTKQPTAEPIREIEVQYGSHVRKQVAGDFGGALDADGKLSYRLTAL EEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE ARDGNLPLGPFNDQRLMIAPSLTWKPSADTTLTLLANYLRDKTNASDSFLPAQGTILPNP EECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCC NGKIPATRFTGSPDFDAYEKTQYSLGYQFEHRLDDTWTVRQNARYMHLRLDDRMTYGVGL CCCCCEEEECCCCCCCCHHHHHHHCCEEEECCCCCEEEEECCCEEEEEEECCCEEEECCC DPSDPTQRTLLRYAGIAQPSYGRLDIDTQAQARFATGMVRHTLLAGVDYQRQTTRDPENY CCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCE ALTSSLDLYNPVYQPTDRSIFSGPGASPQDIRQRQTQLGLYLQDQLKLGERWVFTLGGRH EEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEHHHCCCCEEEEEECCCC DWADTRTDDLLGGTTASQRDAAFTGRVGVVYLAPYGISPYLSYSTSFNPTVGTDRNGQAF CCCCCCCCHHCCCCCCCCCCCEEECCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCC KPTKGRQVEAGVKVQAGSKASVTASVFRIHQRNVLTPDLDDPAGTHSTQTGEVRSQGFEL CCCCCCEEECCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCEEE EATVQPMAGWNVIAGYIYQDVRNTRANDASLDKWPIAIPTPRQIASLWTDYRIRSGVLQG EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC VGIGAGVRYVSPTAGAPDNALRVPGYALFDAAIFYSAGRHWRLALNGTNLANREVISGCY CCCCCCCEEECCCCCCCCCCEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH DATRCIYANGRTVLATAKYAW HCCEEEEECCCEEEEEECCCC >Mature Secondary Structure MNRHRRPVRQSRAPRPGALAAAALFASTAIAQSRMVIDIPAEPLDAALNTLARQAGTQLV CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCEEE FASALTAGKTAPHVQGHYSVEETLNRLLAQSGLTARRQGDNTFTIEPAGSGAEVTLPATV EEHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCEEEECEEE TTAAQAESANGPVHGYVARRSATGTKTDAPIEEIPQSISVVTRDRFEAQGAQSVNEALRY EEHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH TASVSTYGAGTRSDWYTAVRGFVPATYLDGLQLPNTINLASWRVDPWQIECVELLRGPAS HHCCEECCCCCCCHHHHHHHHCCCHHHHCCCCCCCEECEEEECCCCHHHHHHHHHCCCCC VLYGQGDPGGTVNVVTKQPTAEPIREIEVQYGSHVRKQVAGDFGGALDADGKLSYRLTAL EEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE ARDGNLPLGPFNDQRLMIAPSLTWKPSADTTLTLLANYLRDKTNASDSFLPAQGTILPNP EECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCC NGKIPATRFTGSPDFDAYEKTQYSLGYQFEHRLDDTWTVRQNARYMHLRLDDRMTYGVGL CCCCCEEEECCCCCCCCHHHHHHHCCEEEECCCCCEEEEECCCEEEEEEECCCEEEECCC DPSDPTQRTLLRYAGIAQPSYGRLDIDTQAQARFATGMVRHTLLAGVDYQRQTTRDPENY CCCCHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCE ALTSSLDLYNPVYQPTDRSIFSGPGASPQDIRQRQTQLGLYLQDQLKLGERWVFTLGGRH EEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEHHHCCCCEEEEEECCCC DWADTRTDDLLGGTTASQRDAAFTGRVGVVYLAPYGISPYLSYSTSFNPTVGTDRNGQAF CCCCCCCCHHCCCCCCCCCCCEEECCEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCC KPTKGRQVEAGVKVQAGSKASVTASVFRIHQRNVLTPDLDDPAGTHSTQTGEVRSQGFEL CCCCCCEEECCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCEEE EATVQPMAGWNVIAGYIYQDVRNTRANDASLDKWPIAIPTPRQIASLWTDYRIRSGVLQG EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC VGIGAGVRYVSPTAGAPDNALRVPGYALFDAAIFYSAGRHWRLALNGTNLANREVISGCY CCCCCCCEEECCCCCCCCCCEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH DATRCIYANGRTVLATAKYAW HCCEEEEECCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]