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The map label for this gene is cyoD1 [H]

Identifier: 17547633

GI number: 17547633

Start: 3140798

End: 3141163

Strand: Reverse

Name: cyoD1 [H]

Synonym: RSc2914

Alternate gene names: 17547633

Gene position: 3141163-3140798 (Counterclockwise)

Preceding gene: 17547634

Following gene: 17547632

Centisome position: 84.52

GC content: 60.38

Gene sequence:

>366_bases
ATGGAACAGACCAACGTTTCCTCCAACGTCCACGCCGACGCGCATGGCCACGCCACCGGCGGTGCCGGCCATGCCACCGT
CAAGGGCTACCTGATCGGCTTCGTGCTGGCCGTGATCCTGACGGTCATTCCGTTCAAGATGGTGATGGGCGGCGGCTTCT
CGCACGACACTGTGCTGGTCACCGTGATGGGGCTGGCGGTCGTGCAGATCGTCGTGCACCTGATCTATTTCCTGCACCTG
GACGGTTCTTCCGCCCAGCGCTGGAACGTGATGGCCTTCCTGTTCACGCTGCTGATCCTGGTCATCGTGATCGTCGGTTC
GCTGTGGGTCATGCACAACATGAACGTCAATATGATGACGCACTGA

Upstream 100 bases:

>100_bases
CAACTCGACCCGCCTGGCGTGCCTGAGCCTGTTCTGGCACTTCTTGGATGTGGTGTGGATCGGCGTGTTCACCGTCGTCT
ATCTGCTGGGAGCGATGTAA

Downstream 100 bases:

>100_bases
GCGCATCATCCGAGCCGCAAGAGAGAGGCGCCCGGCATGGGCGCCTTTTTCTTTGGCCGCGCGCCGCCCGATCCGGTGCG
GCCTGCCGCCCGCCTTTGCT

Product: transmembrane cytochrome O ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MEQTNVSSNVHADAHGHATGGAGHATVKGYLIGFVLAVILTVIPFKMVMGGGFSHDTVLVTVMGLAVVQIVVHLIYFLHL
DGSSAQRWNVMAFLFTLLILVIVIVGSLWVMHNMNVNMMTH

Sequences:

>Translated_121_residues
MEQTNVSSNVHADAHGHATGGAGHATVKGYLIGFVLAVILTVIPFKMVMGGGFSHDTVLVTVMGLAVVQIVVHLIYFLHL
DGSSAQRWNVMAFLFTLLILVIVIVGSLWVMHNMNVNMMTH
>Mature_121_residues
MEQTNVSSNVHADAHGHATGGAGHATVKGYLIGFVLAVILTVIPFKMVMGGGFSHDTVLVTVMGLAVVQIVVHLIYFLHL
DGSSAQRWNVMAFLFTLLILVIVIVGSLWVMHNMNVNMMTH

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=108, Percent_Identity=50.9259259259259, Blast_Score=115, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 13083; Mature: 13083

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.4 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTNVSSNVHADAHGHATGGAGHATVKGYLIGFVLAVILTVIPFKMVMGGGFSHDTVLV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TVMGLAVVQIVVHLIYFLHLDGSSAQRWNVMAFLFTLLILVIVIVGSLWVMHNMNVNMMT
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
H
C
>Mature Secondary Structure
MEQTNVSSNVHADAHGHATGGAGHATVKGYLIGFVLAVILTVIPFKMVMGGGFSHDTVLV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
TVMGLAVVQIVVHLIYFLHLDGSSAQRWNVMAFLFTLLILVIVIVGSLWVMHNMNVNMMT
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]