| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is livK [C]
Identifier: 17547160
GI number: 17547160
Start: 2647010
End: 2648020
Strand: Reverse
Name: livK [C]
Synonym: RSc2441
Alternate gene names: 17547160
Gene position: 2648020-2647010 (Counterclockwise)
Preceding gene: 17547161
Following gene: 17547159
Centisome position: 71.25
GC content: 61.03
Gene sequence:
>1011_bases TTGGGCAAAGACAACGAAAACGGTGCACGCCTGGCCGTGGAAGATGTCAACAAGGAAGGGCTGACCATCGACGGCAAGAA GATCAAGCTGGAGCTGGTGGGCGAGGATGATGCGGCTGATCCGAAGACGGGTACGGCCGTTGCGCAAAAGCTGGTGGACG AGAAAGTCGTCGCCGTCGTGGGCCACCTGAACTCGGGCGTGTCGATCCCGGCCTCGAAGATTTACAGCGATGCCGGCATC GTGCAGATCTCGCCGTCGTCGACCAACCCCGACTACACCAAGCAGGGCTTCAAGACGACCTACCGCGTGGTTGCGACCGA CGCGCAGCAGGGTCCGGCCCTGGCCAACTACGCCGCCAAGACCCTGGGCGCCAAGAGCGTGGCGATCGTCGACGATGCCA CCGCCTACGGCAAGGGCCTGGCCGACGAGTTCGAGAAGACCGCGAAGGCCGACGGCGTGAACGTGGTGGCACGTGAAGCC ACCAACGACAAGGCCACCGACTTCAAGGCCATTCTGACCAAGATCAAGGGCAAGAAGCCGGACGTGATCATGTACGGCGG CATGGACGCCACCGGCGGTCCGTTCGCCAAGCAGGCCAAGGAACTGGGCATCACGGCCAAGATCGTTGGCGGCGACGGCG TGTGCACCGACAAGGTGGCCGAACTGGCCGGCGACGCCATCGACAATATCATCTGCTCGGAAGCGGGCCTGGCGCTGTCG AAGATGGAGAAGGGCGCGGACTTCGAGAAGAAGTACGAAGACCGCTTCAAGACGCCGGTGCAGATCTACGCACCGTTCAC GTATGACGCCGTGATGGTCGTCGTCGATGCGATGAAGCGCTCCAACTCGGTGGACCCCGCCAAGATCCTGGCTGCCATGC CGACAACCAATTATCACGGCGTGATCGGCAACATCGCGTTCGACGACAAGGGTGACCTGAAGGAAGGTTCGATCACCCTG TACAACTACAAGGACAAAAAGAAGACCGTTCTTGACGTCGTGAAGATGTAA
Upstream 100 bases:
>100_bases GCCTGCTGCAACGTCGGCCCCGGCCGCTGCTGCTGCCGGTGGTGGTGAGACCGTCATCAAGATTGGTCACGCCGCACCGT TGACGGGTGGTATCGCTCAC
Downstream 100 bases:
>100_bases TCGAGGGGTTATCCGCCCTGGAAAACGGCACCGCGCCTTACCCTAGCGGTGCCGTTTTTTATCGCCTCGCCAGTTACACA AGACCCTCACCATGGGTGCG
Product: amino acid-binding periplasmic ABC transporter protein
Products: ADP; phosphate; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MGKDNENGARLAVEDVNKEGLTIDGKKIKLELVGEDDAADPKTGTAVAQKLVDEKVVAVVGHLNSGVSIPASKIYSDAGI VQISPSSTNPDYTKQGFKTTYRVVATDAQQGPALANYAAKTLGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREA TNDKATDFKAILTKIKGKKPDVIMYGGMDATGGPFAKQAKELGITAKIVGGDGVCTDKVAELAGDAIDNIICSEAGLALS KMEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRSNSVDPAKILAAMPTTNYHGVIGNIAFDDKGDLKEGSITL YNYKDKKKTVLDVVKM
Sequences:
>Translated_336_residues MGKDNENGARLAVEDVNKEGLTIDGKKIKLELVGEDDAADPKTGTAVAQKLVDEKVVAVVGHLNSGVSIPASKIYSDAGI VQISPSSTNPDYTKQGFKTTYRVVATDAQQGPALANYAAKTLGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREA TNDKATDFKAILTKIKGKKPDVIMYGGMDATGGPFAKQAKELGITAKIVGGDGVCTDKVAELAGDAIDNIICSEAGLALS KMEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRSNSVDPAKILAAMPTTNYHGVIGNIAFDDKGDLKEGSITL YNYKDKKKTVLDVVKM >Mature_335_residues GKDNENGARLAVEDVNKEGLTIDGKKIKLELVGEDDAADPKTGTAVAQKLVDEKVVAVVGHLNSGVSIPASKIYSDAGIV QISPSSTNPDYTKQGFKTTYRVVATDAQQGPALANYAAKTLGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREAT NDKATDFKAILTKIKGKKPDVIMYGGMDATGGPFAKQAKELGITAKIVGGDGVCTDKVAELAGDAIDNIICSEAGLALSK MEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRSNSVDPAKILAAMPTTNYHGVIGNIAFDDKGDLKEGSITLY NYKDKKKTVLDVVKM
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
Organism=Escherichia coli, GI1789867, Length=325, Percent_Identity=32.6153846153846, Blast_Score=174, Evalue=5e-45, Organism=Escherichia coli, GI48994941, Length=326, Percent_Identity=30.6748466257669, Blast_Score=153, Evalue=2e-38,
Paralogues:
None
Copy number: 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 35544; Mature: 35413
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKDNENGARLAVEDVNKEGLTIDGKKIKLELVGEDDAADPKTGTAVAQKLVDEKVVAVV CCCCCCCCCEEEEEECCCCCCEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH GHLNSGVSIPASKIYSDAGIVQISPSSTNPDYTKQGFKTTYRVVATDAQQGPALANYAAK HHCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHEEEEEEEECCCCCCHHHHHHHH TLGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREATNDKATDFKAILTKIKGKKP HCCCCEEEEEECCHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC DVIMYGGMDATGGPFAKQAKELGITAKIVGGDGVCTDKVAELAGDAIDNIICSEAGLALS CEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH KMEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRSNSVDPAKILAAMPTTNYHG HHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCC VIGNIAFDDKGDLKEGSITLYNYKDKKKTVLDVVKM EEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHCC >Mature Secondary Structure GKDNENGARLAVEDVNKEGLTIDGKKIKLELVGEDDAADPKTGTAVAQKLVDEKVVAVV CCCCCCCCEEEEEECCCCCCEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH GHLNSGVSIPASKIYSDAGIVQISPSSTNPDYTKQGFKTTYRVVATDAQQGPALANYAAK HHCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHEEEEEEEECCCCCCHHHHHHHH TLGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREATNDKATDFKAILTKIKGKKP HCCCCEEEEEECCHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC DVIMYGGMDATGGPFAKQAKELGITAKIVGGDGVCTDKVAELAGDAIDNIICSEAGLALS CEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH KMEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRSNSVDPAKILAAMPTTNYHG HHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCCC VIGNIAFDDKGDLKEGSITLYNYKDKKKTVLDVVKM EEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA