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The map label for this gene is rarA [H]

Identifier: 17547057

GI number: 17547057

Start: 2536193

End: 2537542

Strand: Reverse

Name: rarA [H]

Synonym: RSc2338

Alternate gene names: 17547057

Gene position: 2537542-2536193 (Counterclockwise)

Preceding gene: 17547058

Following gene: 17547056

Centisome position: 68.28

GC content: 70.37

Gene sequence:

>1350_bases
ATGAACGCTTCTCTTTTCCCGGACGCGCCGCCCGCCCACATGCCGCTGGCGGAGCGCCTGCGCCCGCATTCCGTCGACGA
GGTCATCGGCCAGCAGCACCTGCTCGGGCCGAGCAAGCCGCTGCGCGTGGCGTTCGCCTCGGGCGAGCCGCATTCGATGA
TCCTGTGGGGGCCGCCGGGGGTGGGCAAGACCACACTGGCGCGGCTGATGGCCGATGCCTTCGACGCGGAGTTCATCGCG
CTGTCCGCGGTGCTGTCGGGCGTCAAGGACATCCGCGACGCGGTGGAGCGGGCCGAGCAGTTTCGAGCGCACGGCCGCCG
CACGCTGGTGTTCGTCGACGAGGTGCACCGCTTCAACAAGAGCCAGCAGGACGCTTTCCTGCCGCACGTGGAGAGCGGCC
TGTTTACCTTCATCGGCGCGACCACCGAGAACCCGTCGTTCGAGGTGAATGGCGCGCTGCTGTCGCGGGCCGCGGTCTAT
GTGCTCAAGAGCCTGTCGGACGACGAGCTCAAGCAGCTGGCCGAGCGCGCGCGGCAGGAGCTGGGCGGCCTGGAGTGGGC
GCCCGCCGCGGTCGATGCCGTGGTCGCCTCCGCCGATGGCGACGGCCGCAAGCTGCTGAACAACATCGAGATCGTCACCC
GCGCCGCGCGCGCGCAGGCCGGGAGCGAGACCGTGCCGGCCATCGACGAGGCGCTGCTGGCCTCCGCGCTGTCGGAGAAC
CTGCGCCGCTTCGACAAGGGCGGCGATGCCTTCTACGACCAGATCAGCGCGCTGCACAAGTCGGTGCGCGGCTCCGATCC
GGACGCGGCGCTGTACTGGTTCTGCCGCATGCTCGACGGCGGCGCCGACCCGCGCTACCTGGCGCGCCGCATCGTCCGCA
TGGCCTGGGAAGACATCGGCCTGGCCGATCCGCGCGCCGCGCGCATCACGCTGGATGCCGCCGAGACCTACGAGCGCCTG
GGCTCGCCCGAAGGCGAACTGGCGCTGGCGCAGGCGCTGATCTACCTGGCCATCGCGCCCAAGTCCAACGCCGGCTACAA
CGCCTACAACGCGGCGCGCGCCTTCGTCGGCCATGACAAGTCGCGGGCGGTGCCGGTCCACCTGCGCAACGCGCCGACCC
GGCTGATGAAAGAGCTCGGCTACGGCCACGCCTACCGCTACGCCCACGACGAGCCCGAAGCCTACGCAGCCGGCGAGACC
TACTTCCCGGACGACCTGTCGCCCCAAGGCTGGTATGTGCCGACGCCGCGCGGGCTGGAAGGCAAGATCGGCGACAAGCT
GCGGCACCTGCGCGAGCTGGACGCGCAATGGCTGGCGCAGCAGAAGAACAAATCCTCCCGCGACGACTGA

Upstream 100 bases:

>100_bases
ATGGGCCTGGTGCAGCGCGCAGCGAACTGACGTCTGCCGGCGCGACCGGCCCGGCCGGTACGGTAGCGGGCCGTGTCGCG
GTTTCTGCGACAATCCCCGC

Downstream 100 bases:

>100_bases
GGCCGGGGCCGGTGCGATAAAATCGGCCCTTTCGATCGTTCGCCATCCTCGGTTTTCCTCCTCACCATGCTCGACATCCA
ACTGCTCCGCAAAGACATCG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MNASLFPDAPPAHMPLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPGVGKTTLARLMADAFDAEFIA
LSAVLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVY
VLKSLSDDELKQLAERARQELGGLEWAPAAVDAVVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSEN
LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERL
GSPEGELALAQALIYLAIAPKSNAGYNAYNAARAFVGHDKSRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGET
YFPDDLSPQGWYVPTPRGLEGKIGDKLRHLRELDAQWLAQQKNKSSRDD

Sequences:

>Translated_449_residues
MNASLFPDAPPAHMPLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPGVGKTTLARLMADAFDAEFIA
LSAVLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVY
VLKSLSDDELKQLAERARQELGGLEWAPAAVDAVVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSEN
LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERL
GSPEGELALAQALIYLAIAPKSNAGYNAYNAARAFVGHDKSRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGET
YFPDDLSPQGWYVPTPRGLEGKIGDKLRHLRELDAQWLAQQKNKSSRDD
>Mature_449_residues
MNASLFPDAPPAHMPLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPGVGKTTLARLMADAFDAEFIA
LSAVLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVY
VLKSLSDDELKQLAERARQELGGLEWAPAAVDAVVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSEN
LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAARITLDAAETYERL
GSPEGELALAQALIYLAIAPKSNAGYNAYNAARAFVGHDKSRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGET
YFPDDLSPQGWYVPTPRGLEGKIGDKLRHLRELDAQWLAQQKNKSSRDD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=433, Percent_Identity=42.0323325635104, Blast_Score=314, Evalue=1e-85,
Organism=Homo sapiens, GI18426904, Length=433, Percent_Identity=37.6443418013857, Blast_Score=258, Evalue=9e-69,
Organism=Escherichia coli, GI1787119, Length=437, Percent_Identity=54.4622425629291, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI1786676, Length=245, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=447, Percent_Identity=39.1498881431767, Blast_Score=308, Evalue=1e-84,
Organism=Drosophila melanogaster, GI17647857, Length=213, Percent_Identity=30.0469483568075, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49199; Mature: 49199

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASLFPDAPPAHMPLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPG
CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCC
VGKTTLARLMADAFDAEFIALSAVLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCC
SQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERARQE
CCCHHCCCHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LGGLEWAPAAVDAVVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSEN
HCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIG
HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
LADPRAARITLDAAETYERLGSPEGELALAQALIYLAIAPKSNAGYNAYNAARAFVGHDK
CCCCCCEEEEECHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCC
SRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLSPQGWYVPTPRGLE
CCCEEEEECCCHHHHHHHCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
GKIGDKLRHLRELDAQWLAQQKNKSSRDD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNASLFPDAPPAHMPLAERLRPHSVDEVIGQQHLLGPSKPLRVAFASGEPHSMILWGPPG
CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCC
VGKTTLARLMADAFDAEFIALSAVLSGVKDIRDAVERAEQFRAHGRRTLVFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCC
SQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERARQE
CCCHHCCCHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LGGLEWAPAAVDAVVASADGDGRKLLNNIEIVTRAARAQAGSETVPAIDEALLASALSEN
HCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LRRFDKGGDAFYDQISALHKSVRGSDPDAALYWFCRMLDGGADPRYLARRIVRMAWEDIG
HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
LADPRAARITLDAAETYERLGSPEGELALAQALIYLAIAPKSNAGYNAYNAARAFVGHDK
CCCCCCEEEEECHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCC
SRAVPVHLRNAPTRLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLSPQGWYVPTPRGLE
CCCEEEEECCCHHHHHHHCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
GKIGDKLRHLRELDAQWLAQQKNKSSRDD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]