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The map label for this gene is rpoZ [H]

Identifier: 17546873

GI number: 17546873

Start: 2338019

End: 2338222

Strand: Reverse

Name: rpoZ [H]

Synonym: RSc2154

Alternate gene names: 17546873

Gene position: 2338222-2338019 (Counterclockwise)

Preceding gene: 17546874

Following gene: 17546872

Centisome position: 62.92

GC content: 61.76

Gene sequence:

>204_bases
ATGGCGCGTATTACCGTCGAAGATTGCTTGAAACAGATTCCGAATCGCTTCGAACTGGCGCTGGCCGCAACGTACCGCGC
GCGTCAGTTGGTGCAGGGCCACACCCCCAAGGTCGATGCCAAGGACAAGCCGACCGTGACCGCGCTGCGCGAGATCGCCG
CCGGCCAGGTCGGGATCGAAATGCTCAAGAAGGTCCCTTCCTGA

Upstream 100 bases:

>100_bases
GAAAGTGTGGTAGGCCCCGCGCCGACGAGGCGTCCGGGGCAGGCGCCGCGCTGCTGCTAAAATACCGGCATCAACACGAT
TTGCCACAGGTGGAGTTTTC

Downstream 100 bases:

>100_bases
GCTGACTGCATTGCCTGGCGTGGTACGCTGCCCCGGTCGCTGATCGTCGACGCGATCTTTCATGGACGTGAAAGCCGCGA
TTCAACGAGACCCCGGCATG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIEMLKKVPS

Sequences:

>Translated_67_residues
MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIEMLKKVPS
>Mature_66_residues
ARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIEMLKKVPS

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 7388; Mature: 7257

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE
CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHH
MLKKVPS
HHHHCCC
>Mature Secondary Structure 
ARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHH
MLKKVPS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA