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The map label for this gene is ycjO [C]

Identifier: 17546862

GI number: 17546862

Start: 2325503

End: 2326456

Strand: Reverse

Name: ycjO [C]

Synonym: RSc2143

Alternate gene names: 17546862

Gene position: 2326456-2325503 (Counterclockwise)

Preceding gene: 17546863

Following gene: 17546861

Centisome position: 62.6

GC content: 63.42

Gene sequence:

>954_bases
ATGGTCCCGACCATGCGTCACTTGCATCTTTCCTTTAGCCACACGACGGCGGTCGGCAAGCCGGCATCGCCGTCCGCGCC
ACGGCGGCGCGACGGCGCGAGCTGGCTCGTGTCGCCGTCCGTCGCGGCGCTGCTGCTGTGGATGTCGATCCCGCTCGCGA
TGACGATCTGGTTTTCGTTCTCGCGATACAACCTGCTGAATCCGGACGTCAAGGGTTTCGCCGGATTCGACAACTACCAT
TTCCTGGCGACGGATCCGTCGTTCGGCCCAGCCATCTGGCACACGCTCGCGTTGATCGGCGCGGTGCTGGTGATCACCGT
GGTCGGCGGCGTGCTGACGGCGGTGCTGTTCGATCGCAAGTTCTACGGGCAGGGCATCGCGCGTTTGCTCATGATCGCGC
CGTTCTTCGTGATGCCGACGGTGTCCGCGCTGATCTGGAAGAACATGATCCTGCATCCGGTATACGGGCTCGTCGCGAGC
GCGATGCGCGCGGTCGGGCTGACACCGATCGACTGGTTCGCCGATTATCCGCTGACCGCTGTCGTGATCATTGTCGCGTG
GCAGTGGTTGCCGTTCGCGTTCCTGATCCTGTTCACCGCGATCCAGTCGCTCGACCAGGAGCAGAAGGAAGCGGCGCGCA
TCGATGGCGCCGGGCCGATCGCGATGTTCTTCTACATCACGCTGCCGCATCTGAAGCGCGCGATCGCGGTCGTGGTGATG
ATGGAGACGATCTTCCTGCTGTCGATCTTCGCGGAGATCTACACGACCACGGGCGGTGGCCCCGGCAACGCGACGACCAA
CCTGTCGTATCTGATCTATGCGCTCGGCCTGCAGCAGTTCGACGTCGGGCTCGCCTCGGCGGGCGGGATCCTGGCTGTCG
TGGTCGCGAACATCGTGTCGTTCTTCCTGGTGCGGATGCTCGCGAAGAACCTGAAAGGGGAGTACCAGCAATGA

Upstream 100 bases:

>100_bases
CCAGAAGTGAACGGTGACGCGCGCCGCGCCGGCAGGGGCGGCACGCCGGATGACGAAGGCGGGCGTGCTGTCGCGCCCGC
GTTTGAATCGTTGATCGAGG

Downstream 100 bases:

>100_bases
GCGATGGGATGCTCGATATGCGCCGTGCGGGCGGCCCGCCGAACGTGTTTGGCGCGGTGCGGCGCGCGCTGCCGGGCGTG
CTCGCCTGGTTGATCGCGCT

Product: transmembrane ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MVPTMRHLHLSFSHTTAVGKPASPSAPRRRDGASWLVSPSVAALLLWMSIPLAMTIWFSFSRYNLLNPDVKGFAGFDNYH
FLATDPSFGPAIWHTLALIGAVLVITVVGGVLTAVLFDRKFYGQGIARLLMIAPFFVMPTVSALIWKNMILHPVYGLVAS
AMRAVGLTPIDWFADYPLTAVVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
METIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVVANIVSFFLVRMLAKNLKGEYQQ

Sequences:

>Translated_317_residues
MVPTMRHLHLSFSHTTAVGKPASPSAPRRRDGASWLVSPSVAALLLWMSIPLAMTIWFSFSRYNLLNPDVKGFAGFDNYH
FLATDPSFGPAIWHTLALIGAVLVITVVGGVLTAVLFDRKFYGQGIARLLMIAPFFVMPTVSALIWKNMILHPVYGLVAS
AMRAVGLTPIDWFADYPLTAVVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
METIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVVANIVSFFLVRMLAKNLKGEYQQ
>Mature_317_residues
MVPTMRHLHLSFSHTTAVGKPASPSAPRRRDGASWLVSPSVAALLLWMSIPLAMTIWFSFSRYNLLNPDVKGFAGFDNYH
FLATDPSFGPAIWHTLALIGAVLVITVVGGVLTAVLFDRKFYGQGIARLLMIAPFFVMPTVSALIWKNMILHPVYGLVAS
AMRAVGLTPIDWFADYPLTAVVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
METIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVVANIVSFFLVRMLAKNLKGEYQQ

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=273, Percent_Identity=29.3040293040293, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789861, Length=278, Percent_Identity=28.4172661870504, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790465, Length=242, Percent_Identity=27.6859504132231, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34672; Mature: 34672

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPTMRHLHLSFSHTTAVGKPASPSAPRRRDGASWLVSPSVAALLLWMSIPLAMTIWFSF
CCCCHHHHEEEEHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
SRYNLLNPDVKGFAGFDNYHFLATDPSFGPAIWHTLALIGAVLVITVVGGVLTAVLFDRK
HHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYGQGIARLLMIAPFFVMPTVSALIWKNMILHPVYGLVASAMRAVGLTPIDWFADYPLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHH
VVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
METIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVVANIVS
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHH
FFLVRMLAKNLKGEYQQ
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVPTMRHLHLSFSHTTAVGKPASPSAPRRRDGASWLVSPSVAALLLWMSIPLAMTIWFSF
CCCCHHHHEEEEHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH
SRYNLLNPDVKGFAGFDNYHFLATDPSFGPAIWHTLALIGAVLVITVVGGVLTAVLFDRK
HHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYGQGIARLLMIAPFFVMPTVSALIWKNMILHPVYGLVASAMRAVGLTPIDWFADYPLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHH
VVIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
METIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVVANIVS
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHH
FFLVRMLAKNLKGEYQQ
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]