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The map label for this gene is ycjN [C]

Identifier: 17546863

GI number: 17546863

Start: 2326547

End: 2327872

Strand: Reverse

Name: ycjN [C]

Synonym: RSc2144

Alternate gene names: 17546863

Gene position: 2327872-2326547 (Counterclockwise)

Preceding gene: 17546864

Following gene: 17546862

Centisome position: 62.64

GC content: 65.08

Gene sequence:

>1326_bases
ATGCAACACAAGACGCTAACCGCCGCCGCGCGTTTCGCTGCCGGTGCGGCGATCGCCACCGCCGCGTGGGCCACGCAGGC
GGCGACGCTGACGATTGCGACGCTGAACAATCCGGACATGCTCGAGCTGAAGAAGCTGTCCGCGACGTTCGAGAAGAACC
ATCCCGACATCAAGCTGAACTGGGTGATTCTCGAAGAGAACGTGCTGCGCCAGCGCGCGACCACCGACATCACGACCGGC
AGCGGCCAGTTCGACGTCATGGCGATCGGCACCTACGAGACGCCGCTGTGGGGCAAGCGCGGCTGGCTCGCGCCGATGGC
GAACCTGCCGGCCGACTACGATCTGGCCGACGTGATCAAGACCGCGCGCGACAGCCTGTCGTACGACGGCCAACTGTATG
CGCTGCCGTTCTACGTCGAGAGCTCGATGACGTTCTACCGCAAGGATCTGTTCGCGGCGAAGGGCCTCACGATGCCGGAT
CAGCCGACCTACGATCAGATCGCGCAGTTCGCGGACAAGCTGACCGACAAAGACAAGGGGGTGTACGGCATCTGCCTGCG
CGGCAAGGCAGGCTGGGGCGAGAACATGGCCTATGTGTCGACGGTCGTGAACACCTTCGGCGGCCGCTGGTTCGACGAGA
AGTGGAACGCGCAGCTGACCTCGCCCGAATGGAAGAAGGCGATCGGCTTCTACGTGAACCTGCTGAAGAAGAACGGCCCG
CCGGGCGCGAGTTCGAACGGCTTCAACGAGAACCTGACGCTGACGGCATCGGGCAAGTGCGCGATGTGGATCGATGCGAC
AGTCGCGGCCGGCATGCTCTATAACAAGCAGCAGTCGCAGGTCGCGGACAAGATCGGTTTTGCCGCCGCGCCGATCGCCG
ACACGCCAAAGGGTTCGCACTGGCTGTGGGCGTGGGCGCTTGCGATCCCGAAGACGTCGAAGCAGCAGGAGGCCGCGAAG
ACATTCGTCACGTGGGCGACATCGAAGCAGTACATCGAGATGGTCGGCAAGGATGAAGGCTGGGCCTCGGTGCCGCCGGG
CACGCGCGCGTCGACGTATCAGCGCGCCGAGTACAAGGCTGCCGCGCCGTTCTCCGACTTCGTGCTGCGTGCGATCGAGA
CCGCCGATCCGACCGATCCGTCGGCCAAGAAGGTGCCGTACACGGGCGTCGCGTATGTCGGGATCCCGGAGTTCCAGTCG
TTCGGCACGGTGGTCGGCCAGAGCATCGCGGGCGCGGTTGCCGGGCAGTTCTCGGTCGATCAGGCGCTTGCCGCAGGACA
GGCGGCCGCCGATCGCTCGGTGCGGCAGGGCGGTTACCAGAAGTGA

Upstream 100 bases:

>100_bases
CGTGATTGCGCGGTATGCGCGCGCGTGTGGAATGCACTGGTCGGGCTGACCGGCTGCGCTTGGGCCGATGCCATATGAAT
AAAACCACAGGAGACAAACC

Downstream 100 bases:

>100_bases
ACGGTGACGCGCGCCGCGCCGGCAGGGGCGGCACGCCGGATGACGAAGGCGGGCGTGCTGTCGCGCCCGCGTTTGAATCG
TTGATCGAGGATGGTCCCGA

Product: sugar-binding periplasmic signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MQHKTLTAAARFAAGAAIATAAWATQAATLTIATLNNPDMLELKKLSATFEKNHPDIKLNWVILEENVLRQRATTDITTG
SGQFDVMAIGTYETPLWGKRGWLAPMANLPADYDLADVIKTARDSLSYDGQLYALPFYVESSMTFYRKDLFAAKGLTMPD
QPTYDQIAQFADKLTDKDKGVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDEKWNAQLTSPEWKKAIGFYVNLLKKNGP
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPIADTPKGSHWLWAWALAIPKTSKQQEAAK
TFVTWATSKQYIEMVGKDEGWASVPPGTRASTYQRAEYKAAAPFSDFVLRAIETADPTDPSAKKVPYTGVAYVGIPEFQS
FGTVVGQSIAGAVAGQFSVDQALAAGQAAADRSVRQGGYQK

Sequences:

>Translated_441_residues
MQHKTLTAAARFAAGAAIATAAWATQAATLTIATLNNPDMLELKKLSATFEKNHPDIKLNWVILEENVLRQRATTDITTG
SGQFDVMAIGTYETPLWGKRGWLAPMANLPADYDLADVIKTARDSLSYDGQLYALPFYVESSMTFYRKDLFAAKGLTMPD
QPTYDQIAQFADKLTDKDKGVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDEKWNAQLTSPEWKKAIGFYVNLLKKNGP
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPIADTPKGSHWLWAWALAIPKTSKQQEAAK
TFVTWATSKQYIEMVGKDEGWASVPPGTRASTYQRAEYKAAAPFSDFVLRAIETADPTDPSAKKVPYTGVAYVGIPEFQS
FGTVVGQSIAGAVAGQFSVDQALAAGQAAADRSVRQGGYQK
>Mature_441_residues
MQHKTLTAAARFAAGAAIATAAWATQAATLTIATLNNPDMLELKKLSATFEKNHPDIKLNWVILEENVLRQRATTDITTG
SGQFDVMAIGTYETPLWGKRGWLAPMANLPADYDLADVIKTARDSLSYDGQLYALPFYVESSMTFYRKDLFAAKGLTMPD
QPTYDQIAQFADKLTDKDKGVYGICLRGKAGWGENMAYVSTVVNTFGGRWFDEKWNAQLTSPEWKKAIGFYVNLLKKNGP
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPIADTPKGSHWLWAWALAIPKTSKQQEAAK
TFVTWATSKQYIEMVGKDEGWASVPPGTRASTYQRAEYKAAAPFSDFVLRAIETADPTDPSAKKVPYTGVAYVGIPEFQS
FGTVVGQSIAGAVAGQFSVDQALAAGQAAADRSVRQGGYQK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47835; Mature: 47835

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHKTLTAAARFAAGAAIATAAWATQAATLTIATLNNPDMLELKKLSATFEKNHPDIKLN
CCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEE
WVILEENVLRQRATTDITTGSGQFDVMAIGTYETPLWGKRGWLAPMANLPADYDLADVIK
EEEECCHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHHHH
TARDSLSYDGQLYALPFYVESSMTFYRKDLFAAKGLTMPDQPTYDQIAQFADKLTDKDKG
HHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
VYGICLRGKAGWGENMAYVSTVVNTFGGRWFDEKWNAQLTSPEWKKAIGFYVNLLKKNGP
EEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPIADTPKGSH
CCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
WLWAWALAIPKTSKQQEAAKTFVTWATSKQYIEMVGKDEGWASVPPGTRASTYQRAEYKA
EEEEEEEECCCCCCHHHHHHHHEEECCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC
AAPFSDFVLRAIETADPTDPSAKKVPYTGVAYVGIPEFQSFGTVVGQSIAGAVAGQFSVD
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
QALAAGQAAADRSVRQGGYQK
HHHHHCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQHKTLTAAARFAAGAAIATAAWATQAATLTIATLNNPDMLELKKLSATFEKNHPDIKLN
CCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEE
WVILEENVLRQRATTDITTGSGQFDVMAIGTYETPLWGKRGWLAPMANLPADYDLADVIK
EEEECCHHHHHHHCCCEECCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHHHH
TARDSLSYDGQLYALPFYVESSMTFYRKDLFAAKGLTMPDQPTYDQIAQFADKLTDKDKG
HHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
VYGICLRGKAGWGENMAYVSTVVNTFGGRWFDEKWNAQLTSPEWKKAIGFYVNLLKKNGP
EEEEEEECCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC
PGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIGFAAAPIADTPKGSH
CCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
WLWAWALAIPKTSKQQEAAKTFVTWATSKQYIEMVGKDEGWASVPPGTRASTYQRAEYKA
EEEEEEEECCCCCCHHHHHHHHEEECCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC
AAPFSDFVLRAIETADPTDPSAKKVPYTGVAYVGIPEFQSFGTVVGQSIAGAVAGQFSVD
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
QALAAGQAAADRSVRQGGYQK
HHHHHCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]