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The map label for this gene is dalR [H]

Identifier: 17546846

GI number: 17546846

Start: 2306574

End: 2307521

Strand: Reverse

Name: dalR [H]

Synonym: RSc2127

Alternate gene names: 17546846

Gene position: 2307521-2306574 (Counterclockwise)

Preceding gene: 17546847

Following gene: 17546843

Centisome position: 62.09

GC content: 67.3

Gene sequence:

>948_bases
GTGCCCAAGCCCACAGAAAAACTCGATCTGGCGACCCGAGCCGCCTGGCTCTACTACATCGCGGGCGACACGCAGAACGA
GATCGCCGAAAAGCTTCAGGTCTCGCGGCCCGTTGCGCAGCGCCTTGTCGCCTTCGCGGTCGAGAAGAATCTGATCCGCG
TGCGCGTGGATCACCGGCTTGCCGACTGTCTCGATCTTGGCGCGCGGTTGTCCAAGCGCTACGGGTTGTCGATGTGCGAG
GTGGTCCCCGTCGATGCCGATGCGCCCGAGGCGATCGATCGCAAGCTCGCGGTCGCGGGGGCGCAAGTGATGGAGCTCTA
TCTGAACGAGATGCGCCCGATGGTCATCGCGATCAGCAGCGGGCGTACGCTGAAGGCCGCCGTCGCGCAGATCGCGCAGA
TCGAGCGGCCGCAGCACCGGCTCGTGTCGATGGTCGGCGCGATCGCGCCGGACGGTGCGTCGAATCGCTACGATGTCGCT
CAGGCGATCTCCGAGAAGACGGGCGGCAAGCATTTCCTGCTGCCCGCGCCGTTGTTCGCGGACAGCGACGCCGAGCGCGC
GCAGTGGTGCAATCACCGGCTGTACCGGATCGTCGAATCGCTGTCGGCCGAGGCGGATGTCGCGTTCGTCGGCATCGGCG
ACATTGCGCCGCAGTGCCCGCTGTTCGAGGATGGCTTTATCACCGCGGAAGAACTCGACGAACTGATCTCGCTCGGTGCG
GTCGCCGAGATGCTGGGCATCCCGATCGATGCCCATGGCCAGCGCGTGACGGCATCGACGAGTGCGCGCGTGACAAGCGT
GCCGCTGCACGCGCCGCCCGAGCGCCCGACCATCGCCATCGCGGGCGGGCCGCGCAAGCGCGATGCGGTGATCGCGGCGT
TGCGCGGCGGCTGGCTATCGGGCCTTGTGACAGACGAGACCTGCGCGAGAGCGGCACTGGAGGCCTAG

Upstream 100 bases:

>100_bases
CAGCCGCTGTATGAGCCGTCGCGGCCGCGACTGGCCTGAGCCCGACTGCGGTACAGTGCGTATCGTTCCCGTACGCAGAC
CCGACTGTCCTTCCACCATC

Downstream 100 bases:

>100_bases
AAGCTTCGATCCAAGCGGGGGCGGCCGTGACAAAGACCGTCGGCTGTCGCGCAGCAGTGATCAGCCGCGGGCTGCGGCTG
TCTCCGGTGCCGTGGCACAC

Product: transcriptional regulator (repressor) transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MPKPTEKLDLATRAAWLYYIAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRLADCLDLGARLSKRYGLSMCE
VVPVDADAPEAIDRKLAVAGAQVMELYLNEMRPMVIAISSGRTLKAAVAQIAQIERPQHRLVSMVGAIAPDGASNRYDVA
QAISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVESLSAEADVAFVGIGDIAPQCPLFEDGFITAEELDELISLGA
VAEMLGIPIDAHGQRVTASTSARVTSVPLHAPPERPTIAIAGGPRKRDAVIAALRGGWLSGLVTDETCARAALEA

Sequences:

>Translated_315_residues
MPKPTEKLDLATRAAWLYYIAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRLADCLDLGARLSKRYGLSMCE
VVPVDADAPEAIDRKLAVAGAQVMELYLNEMRPMVIAISSGRTLKAAVAQIAQIERPQHRLVSMVGAIAPDGASNRYDVA
QAISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVESLSAEADVAFVGIGDIAPQCPLFEDGFITAEELDELISLGA
VAEMLGIPIDAHGQRVTASTSARVTSVPLHAPPERPTIAIAGGPRKRDAVIAALRGGWLSGLVTDETCARAALEA
>Mature_314_residues
PKPTEKLDLATRAAWLYYIAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRLADCLDLGARLSKRYGLSMCEV
VPVDADAPEAIDRKLAVAGAQVMELYLNEMRPMVIAISSGRTLKAAVAQIAQIERPQHRLVSMVGAIAPDGASNRYDVAQ
AISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVESLSAEADVAFVGIGDIAPQCPLFEDGFITAEELDELISLGAV
AEMLGIPIDAHGQRVTASTSARVTSVPLHAPPERPTIAIAGGPRKRDAVIAALRGGWLSGLVTDETCARAALEA

Specific function: In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFGE operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho- AI-2, leading to the transcription of the lsr genes [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=310, Percent_Identity=29.0322580645161, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=24.6006389776358, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33903; Mature: 33772

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPTEKLDLATRAAWLYYIAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRL
CCCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
ADCLDLGARLSKRYGLSMCEVVPVDADAPEAIDRKLAVAGAQVMELYLNEMRPMVIAISS
HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
GRTLKAAVAQIAQIERPQHRLVSMVGAIAPDGASNRYDVAQAISEKTGGKHFLLPAPLFA
CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCC
DSDAERAQWCNHRLYRIVESLSAEADVAFVGIGDIAPQCPLFEDGFITAEELDELISLGA
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAEMLGIPIDAHGQRVTASTSARVTSVPLHAPPERPTIAIAGGPRKRDAVIAALRGGWLS
HHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHH
GLVTDETCARAALEA
CCCCHHHHHHHHHCC
>Mature Secondary Structure 
PKPTEKLDLATRAAWLYYIAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHRL
CCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
ADCLDLGARLSKRYGLSMCEVVPVDADAPEAIDRKLAVAGAQVMELYLNEMRPMVIAISS
HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
GRTLKAAVAQIAQIERPQHRLVSMVGAIAPDGASNRYDVAQAISEKTGGKHFLLPAPLFA
CCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCC
DSDAERAQWCNHRLYRIVESLSAEADVAFVGIGDIAPQCPLFEDGFITAEELDELISLGA
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
VAEMLGIPIDAHGQRVTASTSARVTSVPLHAPPERPTIAIAGGPRKRDAVIAALRGGWLS
HHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHH
GLVTDETCARAALEA
CCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA