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The map label for this gene is 17546565

Identifier: 17546565

GI number: 17546565

Start: 2028354

End: 2029922

Strand: Reverse

Name: 17546565

Synonym: RSc1846

Alternate gene names: NA

Gene position: 2029922-2028354 (Counterclockwise)

Preceding gene: 17546566

Following gene: 17546564

Centisome position: 54.62

GC content: 62.78

Gene sequence:

>1569_bases
ATGATCGGGTCGCGGTGCTGCGCGCCCTACCACCTGGACTCCGCGATGCTGGTCCAACCCGTTGACCTCCAGCAATGGAC
TGCGAAGGACGCCGATCACTGGTTGGGCCAGATCGTGCGGCAACTACCTGCCCTGCCGCCCTTGCTGCGCTATTACGACG
ACTTCGATGACGCCACGCGTGTGATCCACAGCCCGACTGAGGCGACGGTCTTTGCGCTCCATATCAATGGAGGCATGCAG
TATCTTGACTTCTCTGCGCACGAACACAGCTATGCGCTGCTGCTGAAGCATCTGTTTCTGTACCTGCTTGGTGGCAACTT
GCATGTATCGACAGCGACGGGGTACCTGCAGGCAACCAAGCACTTCAGCTATGCCGAGGTCCTCGCATTGTTGATGGCTG
GCCCGGGAAATTGCGTAGCCAGTTGGGCGGAATTACGAGCCTTGGGAAAACCAACGGAGGCTTACGGATTTGCTAAGGCG
CTGCTGCGCTTGCTCTGCCACTATCGTCTGTGTGGCTGGTCACCTGAGTACAGGGAGTTCATCGGTGTTGCACTACCCTG
GCCGGCTCGCGACAAATATGCCGGTGTGCGCACGGGCGAGGTGTTCCTGTCCGTCGAGGAAGAGGCGGTGATTGTTCGCT
ACTTGGACGAGACCGTGCAAGCCGGTGCGGGAATACCGCACGAGGACCTGTGCGATGCGGTGATGCTGCTGTGCGCCTAT
CAGTTCGGCATGCGTCCCATCCAGATTGCGCTGCTAGCCTTGCGTGATGTGCGTGTCTGGCAGGACGTCGGTGATGTGTT
GCCGGCGGTGCACTTGACGTTCCGCATGGTCAAGCAGCGGCGCGGTGCCGTGATTAAGCCCCTGCTCCGTCGTGTCAAGC
GGGAGTGGGCGGCGCTTCCCGCGCAACTCGAGCAGGTGCATCGAGCCCGGGAATGCGCTGGCGCCCAGCGCTTCTGCAGC
GTGGAGTCGGCCCACCAGGTATCGATGCGGATTGCTAACCTGACCGAACGCTTGCTTGGCGTGCGGGTGACGGCCACGGA
TCTGCGCCATACGGCGGCGCAGCGGCTGGTGGACGCGGGTGCCAACCAGGAGGAGTTGGCCGCCTTCCTTGGGCATGCCG
ACGTGGCAACCGGGCTGGTGTACTTCGATAGCTCACCCAACCAGGCCGAGCGTGTCAACCGTGCGATGGGGCTCTCGCCG
GTCTATCAACGGGTGGCCCGCATCGCGCACGCGCGCTTCATCAGCGCGGAAGAATTGAGTACGCTCAAGGGCGAACAGCA
GATCGCCGGCGTGCCGCATGGGCTGCCGATTGCAGGCATCGGCGGCTGCACCACCGGACAGCCGGCGTGTCCGTTCAACC
CGATCACGTCGTGCTATGGGTGCCACCGGTTCATGCCGGTGCGTGACACGCGCTTGCATCGCGAAGTGCTCGACGGCCTG
CGTGGCGTGGTGCGCTTCTTCCATGACACCTCGCGCAGCGAAGCATCCTCTCCCGCTTACTTGCAACTCCAGCATGCCAT
TGCCGGCGTGCAAGCGATCCTCGCCGAGCTGGAGGGAGACGCGCAATGA

Upstream 100 bases:

>100_bases
CGCACCTTCTTCGGTTGGTCTCACACCTCCGACCAACCTGCGAACTATGCGCGAGCCGTGTTCGAAGACCGCCTTGCGGT
GGTCTGGAACAACGTCTTCG

Downstream 100 bases:

>100_bases
ATGCCGGCTATCGTGCCTACGTGGACTTGGGCCGCACGCTGGCGGAGCAGCGTGGCCTGCAGTGGTTGTTGCCACTGGAG
CCGGACGGGCGTGTGAGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase Family Protein; Phage-Type Integrase; Phage Integrase Family; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MIGSRCCAPYHLDSAMLVQPVDLQQWTAKDADHWLGQIVRQLPALPPLLRYYDDFDDATRVIHSPTEATVFALHINGGMQ
YLDFSAHEHSYALLLKHLFLYLLGGNLHVSTATGYLQATKHFSYAEVLALLMAGPGNCVASWAELRALGKPTEAYGFAKA
LLRLLCHYRLCGWSPEYREFIGVALPWPARDKYAGVRTGEVFLSVEEEAVIVRYLDETVQAGAGIPHEDLCDAVMLLCAY
QFGMRPIQIALLALRDVRVWQDVGDVLPAVHLTFRMVKQRRGAVIKPLLRRVKREWAALPAQLEQVHRARECAGAQRFCS
VESAHQVSMRIANLTERLLGVRVTATDLRHTAAQRLVDAGANQEELAAFLGHADVATGLVYFDSSPNQAERVNRAMGLSP
VYQRVARIAHARFISAEELSTLKGEQQIAGVPHGLPIAGIGGCTTGQPACPFNPITSCYGCHRFMPVRDTRLHREVLDGL
RGVVRFFHDTSRSEASSPAYLQLQHAIAGVQAILAELEGDAQ

Sequences:

>Translated_522_residues
MIGSRCCAPYHLDSAMLVQPVDLQQWTAKDADHWLGQIVRQLPALPPLLRYYDDFDDATRVIHSPTEATVFALHINGGMQ
YLDFSAHEHSYALLLKHLFLYLLGGNLHVSTATGYLQATKHFSYAEVLALLMAGPGNCVASWAELRALGKPTEAYGFAKA
LLRLLCHYRLCGWSPEYREFIGVALPWPARDKYAGVRTGEVFLSVEEEAVIVRYLDETVQAGAGIPHEDLCDAVMLLCAY
QFGMRPIQIALLALRDVRVWQDVGDVLPAVHLTFRMVKQRRGAVIKPLLRRVKREWAALPAQLEQVHRARECAGAQRFCS
VESAHQVSMRIANLTERLLGVRVTATDLRHTAAQRLVDAGANQEELAAFLGHADVATGLVYFDSSPNQAERVNRAMGLSP
VYQRVARIAHARFISAEELSTLKGEQQIAGVPHGLPIAGIGGCTTGQPACPFNPITSCYGCHRFMPVRDTRLHREVLDGL
RGVVRFFHDTSRSEASSPAYLQLQHAIAGVQAILAELEGDAQ
>Mature_522_residues
MIGSRCCAPYHLDSAMLVQPVDLQQWTAKDADHWLGQIVRQLPALPPLLRYYDDFDDATRVIHSPTEATVFALHINGGMQ
YLDFSAHEHSYALLLKHLFLYLLGGNLHVSTATGYLQATKHFSYAEVLALLMAGPGNCVASWAELRALGKPTEAYGFAKA
LLRLLCHYRLCGWSPEYREFIGVALPWPARDKYAGVRTGEVFLSVEEEAVIVRYLDETVQAGAGIPHEDLCDAVMLLCAY
QFGMRPIQIALLALRDVRVWQDVGDVLPAVHLTFRMVKQRRGAVIKPLLRRVKREWAALPAQLEQVHRARECAGAQRFCS
VESAHQVSMRIANLTERLLGVRVTATDLRHTAAQRLVDAGANQEELAAFLGHADVATGLVYFDSSPNQAERVNRAMGLSP
VYQRVARIAHARFISAEELSTLKGEQQIAGVPHGLPIAGIGGCTTGQPACPFNPITSCYGCHRFMPVRDTRLHREVLDGL
RGVVRFFHDTSRSEASSPAYLQLQHAIAGVQAILAELEGDAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57715; Mature: 57715

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGSRCCAPYHLDSAMLVQPVDLQQWTAKDADHWLGQIVRQLPALPPLLRYYDDFDDATR
CCCCCCCCCCCCCCCCEECCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHH
VIHSPTEATVFALHINGGMQYLDFSAHEHSYALLLKHLFLYLLGGNLHVSTATGYLQATK
HHCCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
HFSYAEVLALLMAGPGNCVASWAELRALGKPTEAYGFAKALLRLLCHYRLCGWSPEYREF
CCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IGVALPWPARDKYAGVRTGEVFLSVEEEAVIVRYLDETVQAGAGIPHEDLCDAVMLLCAY
HCCCCCCCCCCCCCCCEECEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QFGMRPIQIALLALRDVRVWQDVGDVLPAVHLTFRMVKQRRGAVIKPLLRRVKREWAALP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCH
AQLEQVHRARECAGAQRFCSVESAHQVSMRIANLTERLLGVRVTATDLRHTAAQRLVDAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCC
ANQEELAAFLGHADVATGLVYFDSSPNQAERVNRAMGLSPVYQRVARIAHARFISAEELS
CCHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
TLKGEQQIAGVPHGLPIAGIGGCTTGQPACPFNPITSCYGCHRFMPVRDTRLHREVLDGL
HHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
RGVVRFFHDTSRSEASSPAYLQLQHAIAGVQAILAELEGDAQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIGSRCCAPYHLDSAMLVQPVDLQQWTAKDADHWLGQIVRQLPALPPLLRYYDDFDDATR
CCCCCCCCCCCCCCCCEECCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHH
VIHSPTEATVFALHINGGMQYLDFSAHEHSYALLLKHLFLYLLGGNLHVSTATGYLQATK
HHCCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
HFSYAEVLALLMAGPGNCVASWAELRALGKPTEAYGFAKALLRLLCHYRLCGWSPEYREF
CCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IGVALPWPARDKYAGVRTGEVFLSVEEEAVIVRYLDETVQAGAGIPHEDLCDAVMLLCAY
HCCCCCCCCCCCCCCCEECEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QFGMRPIQIALLALRDVRVWQDVGDVLPAVHLTFRMVKQRRGAVIKPLLRRVKREWAALP
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCH
AQLEQVHRARECAGAQRFCSVESAHQVSMRIANLTERLLGVRVTATDLRHTAAQRLVDAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCC
ANQEELAAFLGHADVATGLVYFDSSPNQAERVNRAMGLSPVYQRVARIAHARFISAEELS
CCHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
TLKGEQQIAGVPHGLPIAGIGGCTTGQPACPFNPITSCYGCHRFMPVRDTRLHREVLDGL
HHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
RGVVRFFHDTSRSEASSPAYLQLQHAIAGVQAILAELEGDAQ
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA