| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17546564
Identifier: 17546564
GI number: 17546564
Start: 2026054
End: 2028357
Strand: Reverse
Name: 17546564
Synonym: RSc1845
Alternate gene names: NA
Gene position: 2028357-2026054 (Counterclockwise)
Preceding gene: 17546565
Following gene: 17546563
Centisome position: 54.58
GC content: 64.58
Gene sequence:
>2304_bases ATGAATGCCGGCTATCGTGCCTACGTGGACTTGGGCCGCACGCTGGCGGAGCAGCGTGGCCTGCAGTGGTTGTTGCCACT GGAGCCGGACGGGCGTGTGAGCAAGGGGCATGGCTGGAATCTCACTACGCTCGCGGGCGATGTACCGCCGCCCACGCACT ACCTGAACCATCTCGGCCGCGACGCCAAGATGCTGCAAGCGCTGGCCGAGCCGTCGCTGCGGGCAGCCCCGCTCTCGGTG GGGTGGCAAGAGCTGATCAAGACGGCGGCACTGGAGCAGTTGCTGGTCAAGCGCAACACCACGGGACACATCGTTGGCAA CATCGTGCGGCCGTTGCGGGTCCTGGCCACGTGCATGCCGGACAAGGAGCCCTGGCAGTTGACGGTGGAGGACGGCAGTC GCGCCGTTGAGCTGGCGCGCGGTTTGCAAGCCTGCGGCAAGCTGGGGGAGATGGTGGAAAGCGTGCTGCGCAACCTGTTC GATGTGCAGCACCTCGCGGACGCCGGACCGCTGTACCGTGGTGTGCCTCGACCGCGATCCGCGTCGACGCGCCGCCGTGC CGCCTTCCTGAAATCTGAGGACGAGTTGCGCGACAGCCTGGAGCAGCGCAAGCGCGCTGAGCGCTTGCCGGAGCGGCGGG CGTTCTGGGAGCTGGTGCGCATCGTGATGACCGAGCCGCCGCGCAGCTACGTCGATACGCTGCGCTTCCTGTGCCTGCGC TCGATGATCGTGACCGGCTTGCGCGTTGGCGAGGCCGTGCTGCTGCCGGCGGACTGGCAACGCAACCGGGTCTACTATGA CCGGCAAGGCCGACCTACCGGAGAAAAAGGAGGCTATGCGGATGCCTTGATGCTGCGCCACTTCGCGGAAAAGCAGCAGA CCGAGGAGAGCGACAGCCGGGTGCTGTTCGAAAAGGCCCAGTATGTACCGGAGATGTTCCGCGAGCTGATCACGGAGACA CTGCAGCGCTGCGTGGAGCTGACCGAGCCATTGCGCCGAACGCTGCGACTGCAAACGGCAACGGGACGGCTGTTGCCCTG GTACGCCGAGCATGACGTCGTGCCCGCCGCGCACCTGTACCCGCACCTGACGGGCAATCCCTTCTGGGCTGCTGTCGACG ACGAAGACCGCGCCCGCTTGCAGGAGCGCTATCGGACGCAGTTCGATGTTGCCGCGTTCCAGGAAATCCACGACCTGCAA CGGAGTGGCCCTAGGCGGCAGTTGGATATGGCAGCCTATATCTATCTGAACCGTCTTGGCAAAGCCATGCAGGCCGACGA CTGCACCCTGTCGTTCCGGCGTCCCGACGGAAGCGTGATCCCGACGGACGCGCGCAAGCAATGGGGACAGACCTGTTTGC ACATCGGCGAACTCGAAGCCTATCTGCGAGTCGCGGTACCGACCAAGCTCTCGGACACGGAAGCGTTGCCGCTGGCGACG GGCACGCTGCAGAGTTGGGAGTTGTTGTTCCTGACGCCGAAACGCTCGCTGGCGGAGGAACGCGATGACGGTCTCTGCGA TGTGACGCGCGTGATGGCAGTGAACCGGCCGGATGGGGGCTTCGTGGCGAACGCGCTTGGGGAGCGTTCGATCGGCGAGT CTCTGTTCGAGCGCTATGGACAAAGCGCCGAAGACAAGCAGTTGCGTCTCGAGTCGCACATGCTGCGGCACCTGCAGAAC ACCGAGTTGTTCCGGCTTGGCGTCGCCGACACGATCATCTCCAAGCGCTTTAACCGGCGTAGCGTAGCCCAGAGCTACGA GTACGACCATCGCAGCCTGGCCGAGCAGTTGGATCAGATTGAGTTGCCGCCGGAAGTGGAGATCTCCTTGGGCGAAAAGG CCTCCACGGTGGCCAAGATGATCCAGGCTGGCAGGGCGAGCGGCCCCGTGGTCGCCACGTTCCTGCGCATCCAGGCCGAT GAGGGCGACGAGGCGGCCTTCGCTTACTTGAAGACGGAAGCCGACGGCTTCCATGCGACACCCTATGGGCACTGCTTGAA CAGCTTTACGGTCGATCCGTGCCCCAAGCACCTGGAATGCTTTACTGGTTGCCGGCACCTCTCTGCCACCAACCTCCCGG AAAACCGCGCGCATCTGACCAGCCTCGAGGGCAAGCTTGTTGCCGCACTCGAGCATGCCCAGGCGCGGCCAGCAACGACG CCCGGGCGTGATAACCAGATCGCGCATGCACAGGTTCGGCTGGACGGCGTGCGCAAGCTGCTGACCACCGCTGACGGCGA GCGTCCGTTCCCTGATGGACCGGACCTATCCATGCCGTCTCCACTTGGAGTGCTCGATGACTGA
Upstream 100 bases:
>100_bases ACACCTCGCGCAGCGAAGCATCCTCTCCCGCTTACTTGCAACTCCAGCATGCCATTGCCGGCGTGCAAGCGATCCTCGCC GAGCTGGAGGGAGACGCGCA
Downstream 100 bases:
>100_bases GACCAAGACCCCGGAATCGATACCTGACGATCCAGACCTGCAACGCATTCTGGAAGAGCTGCTGGCCCACGACGAGAACA TTACTGCGCGAGCGGTCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 767; Mature: 767
Protein sequence:
>767_residues MNAGYRAYVDLGRTLAEQRGLQWLLPLEPDGRVSKGHGWNLTTLAGDVPPPTHYLNHLGRDAKMLQALAEPSLRAAPLSV GWQELIKTAALEQLLVKRNTTGHIVGNIVRPLRVLATCMPDKEPWQLTVEDGSRAVELARGLQACGKLGEMVESVLRNLF DVQHLADAGPLYRGVPRPRSASTRRRAAFLKSEDELRDSLEQRKRAERLPERRAFWELVRIVMTEPPRSYVDTLRFLCLR SMIVTGLRVGEAVLLPADWQRNRVYYDRQGRPTGEKGGYADALMLRHFAEKQQTEESDSRVLFEKAQYVPEMFRELITET LQRCVELTEPLRRTLRLQTATGRLLPWYAEHDVVPAAHLYPHLTGNPFWAAVDDEDRARLQERYRTQFDVAAFQEIHDLQ RSGPRRQLDMAAYIYLNRLGKAMQADDCTLSFRRPDGSVIPTDARKQWGQTCLHIGELEAYLRVAVPTKLSDTEALPLAT GTLQSWELLFLTPKRSLAEERDDGLCDVTRVMAVNRPDGGFVANALGERSIGESLFERYGQSAEDKQLRLESHMLRHLQN TELFRLGVADTIISKRFNRRSVAQSYEYDHRSLAEQLDQIELPPEVEISLGEKASTVAKMIQAGRASGPVVATFLRIQAD EGDEAAFAYLKTEADGFHATPYGHCLNSFTVDPCPKHLECFTGCRHLSATNLPENRAHLTSLEGKLVAALEHAQARPATT PGRDNQIAHAQVRLDGVRKLLTTADGERPFPDGPDLSMPSPLGVLDD
Sequences:
>Translated_767_residues MNAGYRAYVDLGRTLAEQRGLQWLLPLEPDGRVSKGHGWNLTTLAGDVPPPTHYLNHLGRDAKMLQALAEPSLRAAPLSV GWQELIKTAALEQLLVKRNTTGHIVGNIVRPLRVLATCMPDKEPWQLTVEDGSRAVELARGLQACGKLGEMVESVLRNLF DVQHLADAGPLYRGVPRPRSASTRRRAAFLKSEDELRDSLEQRKRAERLPERRAFWELVRIVMTEPPRSYVDTLRFLCLR SMIVTGLRVGEAVLLPADWQRNRVYYDRQGRPTGEKGGYADALMLRHFAEKQQTEESDSRVLFEKAQYVPEMFRELITET LQRCVELTEPLRRTLRLQTATGRLLPWYAEHDVVPAAHLYPHLTGNPFWAAVDDEDRARLQERYRTQFDVAAFQEIHDLQ RSGPRRQLDMAAYIYLNRLGKAMQADDCTLSFRRPDGSVIPTDARKQWGQTCLHIGELEAYLRVAVPTKLSDTEALPLAT GTLQSWELLFLTPKRSLAEERDDGLCDVTRVMAVNRPDGGFVANALGERSIGESLFERYGQSAEDKQLRLESHMLRHLQN TELFRLGVADTIISKRFNRRSVAQSYEYDHRSLAEQLDQIELPPEVEISLGEKASTVAKMIQAGRASGPVVATFLRIQAD EGDEAAFAYLKTEADGFHATPYGHCLNSFTVDPCPKHLECFTGCRHLSATNLPENRAHLTSLEGKLVAALEHAQARPATT PGRDNQIAHAQVRLDGVRKLLTTADGERPFPDGPDLSMPSPLGVLDD >Mature_767_residues MNAGYRAYVDLGRTLAEQRGLQWLLPLEPDGRVSKGHGWNLTTLAGDVPPPTHYLNHLGRDAKMLQALAEPSLRAAPLSV GWQELIKTAALEQLLVKRNTTGHIVGNIVRPLRVLATCMPDKEPWQLTVEDGSRAVELARGLQACGKLGEMVESVLRNLF DVQHLADAGPLYRGVPRPRSASTRRRAAFLKSEDELRDSLEQRKRAERLPERRAFWELVRIVMTEPPRSYVDTLRFLCLR SMIVTGLRVGEAVLLPADWQRNRVYYDRQGRPTGEKGGYADALMLRHFAEKQQTEESDSRVLFEKAQYVPEMFRELITET LQRCVELTEPLRRTLRLQTATGRLLPWYAEHDVVPAAHLYPHLTGNPFWAAVDDEDRARLQERYRTQFDVAAFQEIHDLQ RSGPRRQLDMAAYIYLNRLGKAMQADDCTLSFRRPDGSVIPTDARKQWGQTCLHIGELEAYLRVAVPTKLSDTEALPLAT GTLQSWELLFLTPKRSLAEERDDGLCDVTRVMAVNRPDGGFVANALGERSIGESLFERYGQSAEDKQLRLESHMLRHLQN TELFRLGVADTIISKRFNRRSVAQSYEYDHRSLAEQLDQIELPPEVEISLGEKASTVAKMIQAGRASGPVVATFLRIQAD EGDEAAFAYLKTEADGFHATPYGHCLNSFTVDPCPKHLECFTGCRHLSATNLPENRAHLTSLEGKLVAALEHAQARPATT PGRDNQIAHAQVRLDGVRKLLTTADGERPFPDGPDLSMPSPLGVLDD
Specific function: Unknown
COG id: COG4688
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86227; Mature: 86227
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAGYRAYVDLGRTLAEQRGLQWLLPLEPDGRVSKGHGWNLTTLAGDVPPPTHYLNHLGR CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCC DAKMLQALAEPSLRAAPLSVGWQELIKTAALEQLLVKRNTTGHIVGNIVRPLRVLATCMP HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC DKEPWQLTVEDGSRAVELARGLQACGKLGEMVESVLRNLFDVQHLADAGPLYRGVPRPRS CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCC ASTRRRAAFLKSEDELRDSLEQRKRAERLPERRAFWELVRIVMTEPPRSYVDTLRFLCLR CCHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SMIVTGLRVGEAVLLPADWQRNRVYYDRQGRPTGEKGGYADALMLRHFAEKQQTEESDSR HHHHHHHHCCCEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH VLFEKAQYVPEMFRELITETLQRCVELTEPLRRTLRLQTATGRLLPWYAEHDVVPAAHLY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC PHLTGNPFWAAVDDEDRARLQERYRTQFDVAAFQEIHDLQRSGPRRQLDMAAYIYLNRLG CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH KAMQADDCTLSFRRPDGSVIPTDARKQWGQTCLHIGELEAYLRVAVPTKLSDTEALPLAT HHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEC GTLQSWELLFLTPKRSLAEERDDGLCDVTRVMAVNRPDGGFVANALGERSIGESLFERYG CCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHC QSAEDKQLRLESHMLRHLQNTELFRLGVADTIISKRFNRRSVAQSYEYDHRSLAEQLDQI CCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC ELPPEVEISLGEKASTVAKMIQAGRASGPVVATFLRIQADEGDEAAFAYLKTEADGFHAT CCCCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCC PYGHCLNSFTVDPCPKHLECFTGCRHLSATNLPENRAHLTSLEGKLVAALEHAQARPATT CHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCC PGRDNQIAHAQVRLDGVRKLLTTADGERPFPDGPDLSMPSPLGVLDD CCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNAGYRAYVDLGRTLAEQRGLQWLLPLEPDGRVSKGHGWNLTTLAGDVPPPTHYLNHLGR CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCC DAKMLQALAEPSLRAAPLSVGWQELIKTAALEQLLVKRNTTGHIVGNIVRPLRVLATCMP HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC DKEPWQLTVEDGSRAVELARGLQACGKLGEMVESVLRNLFDVQHLADAGPLYRGVPRPRS CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCC ASTRRRAAFLKSEDELRDSLEQRKRAERLPERRAFWELVRIVMTEPPRSYVDTLRFLCLR CCHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SMIVTGLRVGEAVLLPADWQRNRVYYDRQGRPTGEKGGYADALMLRHFAEKQQTEESDSR HHHHHHHHCCCEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH VLFEKAQYVPEMFRELITETLQRCVELTEPLRRTLRLQTATGRLLPWYAEHDVVPAAHLY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC PHLTGNPFWAAVDDEDRARLQERYRTQFDVAAFQEIHDLQRSGPRRQLDMAAYIYLNRLG CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH KAMQADDCTLSFRRPDGSVIPTDARKQWGQTCLHIGELEAYLRVAVPTKLSDTEALPLAT HHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEC GTLQSWELLFLTPKRSLAEERDDGLCDVTRVMAVNRPDGGFVANALGERSIGESLFERYG CCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHC QSAEDKQLRLESHMLRHLQNTELFRLGVADTIISKRFNRRSVAQSYEYDHRSLAEQLDQI CCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC ELPPEVEISLGEKASTVAKMIQAGRASGPVVATFLRIQADEGDEAAFAYLKTEADGFHAT CCCCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCC PYGHCLNSFTVDPCPKHLECFTGCRHLSATNLPENRAHLTSLEGKLVAALEHAQARPATT CHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCC PGRDNQIAHAQVRLDGVRKLLTTADGERPFPDGPDLSMPSPLGVLDD CCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA