| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is fabZ
Identifier: 17546134
GI number: 17546134
Start: 1515642
End: 1516136
Strand: Direct
Name: fabZ
Synonym: RSc1415
Alternate gene names: 17546134
Gene position: 1515642-1516136 (Clockwise)
Preceding gene: 17546133
Following gene: 17546135
Centisome position: 40.78
GC content: 62.02
Gene sequence:
>495_bases ATGACCGAACCCTCTGCCGCGACGACGAGCCTCGTCAGCGATTTCAACATCAAGAAGATTCTCGAACTGCTGCCGCACCG CTATCCGATGCTGCTGGTCGATCGCGTGCTCGAGATGGAGCCGCGCAAGCGCATCAAGGCGATCAAGAACGTCACCTTCA ACGAGCCGTTCTTCAACGGCCATTTCCCGGGCCACCCGGTGATGCCGGGCGTGCTGATGCTCGAAGCGCTGGCCCAGACC GCCGCGCTGCTGACCTTCGGCGAGTCCAATCACAAGCGCCAGGAAAACCAGCTCTACCTGTTCGTCAGCATCGATGGCGC GCGCTTCAAGCGCCAGGTCACGCCGGGCGATCAGCTGGTGCTGAACGCCGAGCTGCTGCGCTCCAAGAGCGGCATGTGGA AGTTCAAGGTGTTCGCGACCGTGGACGATGAAGTCGCGGCCGAGGCTGAGATCATGTGTGCCGTGCGCGAAGACAAGTCC AAGGGCGACGCATGA
Upstream 100 bases:
>100_bases CGGATTGGGAACGTAACGCGGCCATCCTCCGTGGCCTGACGCGCATGCGCGAACGGTTGCAACAACTGGAACAGCAGGTC AAGCATCTGCAGCAATCATC
Downstream 100 bases:
>100_bases CGCAAGTTCAGAAGATTCACCCGACCGCGGTGATCGACCCGCAGGCCGAACTGGCCCCGGATGTCGAGGTCGGCGCCTTT ACCGTGATCGGCCCGAATGT
Product: (3R)-hydroxymyristoyl-ACP dehydratase
Products: NA
Alternate protein names: (3R)-hydroxymyristoyl ACP dehydrase
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MTEPSAATTSLVSDFNIKKILELLPHRYPMLLVDRVLEMEPRKRIKAIKNVTFNEPFFNGHFPGHPVMPGVLMLEALAQT AALLTFGESNHKRQENQLYLFVSIDGARFKRQVTPGDQLVLNAELLRSKSGMWKFKVFATVDDEVAAEAEIMCAVREDKS KGDA
Sequences:
>Translated_164_residues MTEPSAATTSLVSDFNIKKILELLPHRYPMLLVDRVLEMEPRKRIKAIKNVTFNEPFFNGHFPGHPVMPGVLMLEALAQT AALLTFGESNHKRQENQLYLFVSIDGARFKRQVTPGDQLVLNAELLRSKSGMWKFKVFATVDDEVAAEAEIMCAVREDKS KGDA >Mature_163_residues TEPSAATTSLVSDFNIKKILELLPHRYPMLLVDRVLEMEPRKRIKAIKNVTFNEPFFNGHFPGHPVMPGVLMLEALAQTA ALLTFGESNHKRQENQLYLFVSIDGARFKRQVTPGDQLVLNAELLRSKSGMWKFKVFATVDDEVAAEAEIMCAVREDKSK GDA
Specific function: Involved in saturated fatty acids biosynthesis
COG id: COG0764
COG function: function code I; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioester dehydratase family. FabZ subfamily
Homologues:
Organism=Escherichia coli, GI1786377, Length=146, Percent_Identity=50.6849315068493, Blast_Score=157, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FABZ_RALSO (Q8XZI0)
Other databases:
- EMBL: AL646052 - RefSeq: NP_519536.1 - ProteinModelPortal: Q8XZI0 - SMR: Q8XZI0 - GeneID: 1220239 - GenomeReviews: AL646052_GR - KEGG: rso:RSc1415 - NMPDR: fig|267608.1.peg.1415 - HOGENOM: HBG433282 - OMA: KERRGVA - ProtClustDB: PRK00006 - BioCyc: RSOL267608:RSC1415-MONOMER - GO: GO:0005737 - HAMAP: MF_00406 - InterPro: IPR013114 - InterPro: IPR010084 - TIGRFAMs: TIGR01750
Pfam domain/function: PF07977 FabA
EC number: 4.2.1.-
Molecular weight: Translated: 18462; Mature: 18330
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: ACT_SITE 61-61
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPSAATTSLVSDFNIKKILELLPHRYPMLLVDRVLEMEPRKRIKAIKNVTFNEPFFNG CCCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC HFPGHPVMPGVLMLEALAQTAALLTFGESNHKRQENQLYLFVSIDGARFKRQVTPGDQLV CCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEEECCHHHEEECCCCCCEE LNAELLRSKSGMWKFKVFATVDDEVAAEAEIMCAVREDKSKGDA EEHHHHHCCCCCEEEEEEEECCHHHHHHHHHEEEEECCCCCCCC >Mature Secondary Structure TEPSAATTSLVSDFNIKKILELLPHRYPMLLVDRVLEMEPRKRIKAIKNVTFNEPFFNG CCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC HFPGHPVMPGVLMLEALAQTAALLTFGESNHKRQENQLYLFVSIDGARFKRQVTPGDQLV CCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEEECCHHHEEECCCCCCEE LNAELLRSKSGMWKFKVFATVDDEVAAEAEIMCAVREDKSKGDA EEHHHHHCCCCCEEEEEEEECCHHHHHHHHHEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11823852