Click here to switch to the map view.

The map label for this gene is ycdJ [C]

Identifier: 17546115

GI number: 17546115

Start: 1487584

End: 1488651

Strand: Direct

Name: ycdJ [C]

Synonym: RSc1396

Alternate gene names: 17546115

Gene position: 1487584-1488651 (Clockwise)

Preceding gene: 17546114

Following gene: 17546116

Centisome position: 40.03

GC content: 68.16

Gene sequence:

>1068_bases
ATGCTGTCGCGCTGGATGTTCGCCGCCGTCACCGTCGTTTTCGCGGCCGCCCTGTCGGCGCTGTCTTCCTCGTCGCCGGC
CGCGCCGGCCGCAGCGGCCACTGACGCGGCCACCTATGGCCCGCGCCTGGAAGGCTTCGACTATCCGGCGCCGGTCAAGC
TGTATCCGTTCGCGTCGCAAGGCAATGCGCTGGAGATGGCGTACCTCGACATCGAGCCCAGGCAGCCCAACGGCGAGGTG
GCGGTGCTGCTGCACGGCAAGAACTTCTGCGCGGCCACCTGGGCCGGCACGATCGCAGCGCTCGCCGGCGCGGGCTACCG
CGTGATCGCGCCCGACCAGATCGGCTTCTGCAAATCGAGCAAGCCGCGCGCCTACCAGTATTCGTTCCAGCAGTTGGCCA
GCAACACGCACGCGCTGCTGGTGTCGCTGGGCATCGGCCAGGCCATCGTGATCGGCCACTCCACCGGCGGCATGCTGGCG
ACCCGCTATGCGCTGATGTATCCGGCCGAAGTGTCGCGGCTGGTGATGATCAACCCGATCGGCCTGGAAGACTGGAAAGC
CAAGGGCGTGCCGCCGATGACGGTCGATCAGTGGTACACGCGCGAAAAGCAGACCACCGCCGAGCGCATCCGCGCCTATG
AGCAGTCGACCTATTACGCCGGCCAGTGGCGTGCCGACTACGAGCCCTGGGTGCAGATGCTGGCGGGCATGTACCGCGGT
CCCGGCCGCGATCTCGTCGCATGGAGCTCCGCGCTGCTGTACGACATGATCTACACCCAGCCGGTGGTCTACGAATTCGG
CCAACTGCGCCCGTGGACGCTGCTGCTGATCGGCCAGAAAGACACCACGGCCATCGCCAAGGACACCGCGCCGCCGGCAG
TCCGCTCGCAACTGGGCAACTACCCGGAACTGGGCCGCGCCGCCGCGCGGGCGATTCCGCACGCCACGCTGGTCGAGTTT
CCCGATGCGGGCCACGCGCCACAGATCCAGGTGCCGGTTGCGTTGCACAACGCCTTGCTGGAATGGCTGGCCAGCCCGGA
GCCCGCGCGCACCCGGCGTCCCGATTGA

Upstream 100 bases:

>100_bases
GGGCGGCGCCTGCATCATCCTGGCGGGCGTCCTGTCGGGGTTGTCGCGGCGCAAGTAGGGTCGCCACCGTCAGGCTTTTC
GCAACCAATCAGGAGCCCGC

Downstream 100 bases:

>100_bases
GCGAAATCCGCGCGCGTCGTACCGATTGCTTACAAATCCGATGCAATTGAGCGTCCGATGGGGCGCATTTCGTCGATTTT
TGTGCACCAGGCAAGGGCTG

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MLSRWMFAAVTVVFAAALSALSSSSPAAPAAAATDAATYGPRLEGFDYPAPVKLYPFASQGNALEMAYLDIEPRQPNGEV
AVLLHGKNFCAATWAGTIAALAGAGYRVIAPDQIGFCKSSKPRAYQYSFQQLASNTHALLVSLGIGQAIVIGHSTGGMLA
TRYALMYPAEVSRLVMINPIGLEDWKAKGVPPMTVDQWYTREKQTTAERIRAYEQSTYYAGQWRADYEPWVQMLAGMYRG
PGRDLVAWSSALLYDMIYTQPVVYEFGQLRPWTLLLIGQKDTTAIAKDTAPPAVRSQLGNYPELGRAAARAIPHATLVEF
PDAGHAPQIQVPVALHNALLEWLASPEPARTRRPD

Sequences:

>Translated_355_residues
MLSRWMFAAVTVVFAAALSALSSSSPAAPAAAATDAATYGPRLEGFDYPAPVKLYPFASQGNALEMAYLDIEPRQPNGEV
AVLLHGKNFCAATWAGTIAALAGAGYRVIAPDQIGFCKSSKPRAYQYSFQQLASNTHALLVSLGIGQAIVIGHSTGGMLA
TRYALMYPAEVSRLVMINPIGLEDWKAKGVPPMTVDQWYTREKQTTAERIRAYEQSTYYAGQWRADYEPWVQMLAGMYRG
PGRDLVAWSSALLYDMIYTQPVVYEFGQLRPWTLLLIGQKDTTAIAKDTAPPAVRSQLGNYPELGRAAARAIPHATLVEF
PDAGHAPQIQVPVALHNALLEWLASPEPARTRRPD
>Mature_355_residues
MLSRWMFAAVTVVFAAALSALSSSSPAAPAAAATDAATYGPRLEGFDYPAPVKLYPFASQGNALEMAYLDIEPRQPNGEV
AVLLHGKNFCAATWAGTIAALAGAGYRVIAPDQIGFCKSSKPRAYQYSFQQLASNTHALLVSLGIGQAIVIGHSTGGMLA
TRYALMYPAEVSRLVMINPIGLEDWKAKGVPPMTVDQWYTREKQTTAERIRAYEQSTYYAGQWRADYEPWVQMLAGMYRG
PGRDLVAWSSALLYDMIYTQPVVYEFGQLRPWTLLLIGQKDTTAIAKDTAPPAVRSQLGNYPELGRAAARAIPHATLVEF
PDAGHAPQIQVPVALHNALLEWLASPEPARTRRPD

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI27597073, Length=338, Percent_Identity=25.4437869822485, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 38663; Mature: 38663

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRWMFAAVTVVFAAALSALSSSSPAAPAAAATDAATYGPRLEGFDYPAPVKLYPFASQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHCCCCCCCCCCCCCEEEEEECCC
GNALEMAYLDIEPRQPNGEVAVLLHGKNFCAATWAGTIAALAGAGYRVIAPDQIGFCKSS
CCEEEEEEEEECCCCCCCCEEEEEECCCEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
KPRAYQYSFQQLASNTHALLVSLGIGQAIVIGHSTGGMLATRYALMYPAEVSRLVMINPI
CCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHEECCCCCEEEEEECC
GLEDWKAKGVPPMTVDQWYTREKQTTAERIRAYEQSTYYAGQWRADYEPWVQMLAGMYRG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHCC
PGRDLVAWSSALLYDMIYTQPVVYEFGQLRPWTLLLIGQKDTTAIAKDTAPPAVRSQLGN
CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEEECCCCCEEECCCCCHHHHHHCCC
YPELGRAAARAIPHATLVEFPDAGHAPQIQVPVALHNALLEWLASPEPARTRRPD
CCHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSRWMFAAVTVVFAAALSALSSSSPAAPAAAATDAATYGPRLEGFDYPAPVKLYPFASQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHCCCCCCCCCCCCCEEEEEECCC
GNALEMAYLDIEPRQPNGEVAVLLHGKNFCAATWAGTIAALAGAGYRVIAPDQIGFCKSS
CCEEEEEEEEECCCCCCCCEEEEEECCCEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
KPRAYQYSFQQLASNTHALLVSLGIGQAIVIGHSTGGMLATRYALMYPAEVSRLVMINPI
CCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHEECCCCCEEEEEECC
GLEDWKAKGVPPMTVDQWYTREKQTTAERIRAYEQSTYYAGQWRADYEPWVQMLAGMYRG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHCC
PGRDLVAWSSALLYDMIYTQPVVYEFGQLRPWTLLLIGQKDTTAIAKDTAPPAVRSQLGN
CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEEECCCCCEEECCCCCHHHHHHCCC
YPELGRAAARAIPHATLVEFPDAGHAPQIQVPVALHNALLEWLASPEPARTRRPD
CCHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]