| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17546114
Identifier: 17546114
GI number: 17546114
Start: 1486621
End: 1487541
Strand: Direct
Name: 17546114
Synonym: RSc1395
Alternate gene names: NA
Gene position: 1486621-1487541 (Clockwise)
Preceding gene: 17546106
Following gene: 17546115
Centisome position: 40.0
GC content: 73.62
Gene sequence:
>921_bases ATGACATCGATTGCATCTCCGGCGCAGGCCGCCACCCACGACGCGTCGCAGTGGACGTCCGCGCTGTACATCCTGGTCGG CGCTTCGGTCTGGGGGATTTCCTGGTACCCGTACCGGCTGCTGGCCGGGTGGGGGCTGGGTAGCCTGCTGGCCTCGGCCA TGACGGGCGCGGCGGCGACCATCGTCGCGGCGGTGGCGCTGCGGCGGCACTTCCATACGTTCCGGTGGTCCTGGCTGATT CCGGCGCTGGGGCTGGTGGCGGGCGTGACCAATGCCGGGTTCGTCTGGAGCACGGTGCACGGCACGGTCATGCGCGTGCT GCTGCTGTTCTACCTCACCCCGCTGTGGACCGCGCTGCTGGCCCGGCTGTGGCTGCACGAGCGGCTGGGCGCGCGTGGCG CGGCGCTGCTCGTGGTGGCGCTCTGCGGCGCCGGCCTGATGCTGGGCGCCGGCAACGCCGGCATGCCCTGGCCGGGCACG GCCGCCGAGTGGTCCGGCGTGGTCGCGGGGCTGGCCTTCGCGTGCAACAACGTGCTGGCGCGGCTGGTCGGGCAGCGCCT GCCGACCATGCGGGCGGAGTTGCGGACCGTGGTGGTCTTCGCCGGCAGCGCCCTGGTCGGCCTGCCGGCGGCGATCTGGC TGGACGGCGTGCAAGCCGTGCCGGATGCGCTGGCGACGGCCGACGTGTGGCTGCTCGTCGGCGGCATGGCCGCCGTGCTG GTGGCCGGCAACACGCTGGTGCAGCGCGGCCTGCAGCGCCTGCCGGCCAACCGCGCCGCGCTGCTGATGCTGTTCGAGAT CGTGGTGGCCGCGGCATCGTCGGCGTGGCTGACGGCGGAACGCCTGTCGGCGCAGGAGATGGCGGGCGGCGCCTGCATCA TCCTGGCGGGCGTCCTGTCGGGGTTGTCGCGGCGCAAGTAG
Upstream 100 bases:
>100_bases CGGACGAAGCCCGAAATTATACGGCCAACGTGCGTCAGTCGCCCCAAGACATTGCTCGTTGCTGGAAGCGGCGGTTTTCC GCCGTTTTTTTATGGGTCAC
Downstream 100 bases:
>100_bases GGTCGCCACCGTCAGGCTTTTCGCAACCAATCAGGAGCCCGCATGCTGTCGCGCTGGATGTTCGCCGCCGTCACCGTCGT TTTCGCGGCCGCCCTGTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MTSIASPAQAATHDASQWTSALYILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAATIVAAVALRRHFHTFRWSWLI PALGLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALLARLWLHERLGARGAALLVVALCGAGLMLGAGNAGMPWPGT AAEWSGVVAGLAFACNNVLARLVGQRLPTMRAELRTVVVFAGSALVGLPAAIWLDGVQAVPDALATADVWLLVGGMAAVL VAGNTLVQRGLQRLPANRAALLMLFEIVVAAASSAWLTAERLSAQEMAGGACIILAGVLSGLSRRK
Sequences:
>Translated_306_residues MTSIASPAQAATHDASQWTSALYILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAATIVAAVALRRHFHTFRWSWLI PALGLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALLARLWLHERLGARGAALLVVALCGAGLMLGAGNAGMPWPGT AAEWSGVVAGLAFACNNVLARLVGQRLPTMRAELRTVVVFAGSALVGLPAAIWLDGVQAVPDALATADVWLLVGGMAAVL VAGNTLVQRGLQRLPANRAALLMLFEIVVAAASSAWLTAERLSAQEMAGGACIILAGVLSGLSRRK >Mature_305_residues TSIASPAQAATHDASQWTSALYILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAATIVAAVALRRHFHTFRWSWLIP ALGLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALLARLWLHERLGARGAALLVVALCGAGLMLGAGNAGMPWPGTA AEWSGVVAGLAFACNNVLARLVGQRLPTMRAELRTVVVFAGSALVGLPAAIWLDGVQAVPDALATADVWLLVGGMAAVLV AGNTLVQRGLQRLPANRAALLMLFEIVVAAASSAWLTAERLSAQEMAGGACIILAGVLSGLSRRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31896; Mature: 31765
Theoretical pI: Translated: 11.11; Mature: 11.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSIASPAQAATHDASQWTSALYILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAAT CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH IVAAVALRRHFHTFRWSWLIPALGLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ARLWLHERLGARGAALLVVALCGAGLMLGAGNAGMPWPGTAAEWSGVVAGLAFACNNVLA HHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RLVGQRLPTMRAELRTVVVFAGSALVGLPAAIWLDGVQAVPDALATADVWLLVGGMAAVL HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAGNTLVQRGLQRLPANRAALLMLFEIVVAAASSAWLTAERLSAQEMAGGACIILAGVLS HHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH GLSRRK HHHCCC >Mature Secondary Structure TSIASPAQAATHDASQWTSALYILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAAT CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH IVAAVALRRHFHTFRWSWLIPALGLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ARLWLHERLGARGAALLVVALCGAGLMLGAGNAGMPWPGTAAEWSGVVAGLAFACNNVLA HHHHHHHHHCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RLVGQRLPTMRAELRTVVVFAGSALVGLPAAIWLDGVQAVPDALATADVWLLVGGMAAVL HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAGNTLVQRGLQRLPANRAALLMLFEIVVAAASSAWLTAERLSAQEMAGGACIILAGVLS HHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH GLSRRK HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA