Click here to switch to the map view.

The map label for this gene is tse [H]

Identifier: 17545874

GI number: 17545874

Start: 1213132

End: 1215021

Strand: Direct

Name: tse [H]

Synonym: RSc1155

Alternate gene names: 17545874

Gene position: 1213132-1215021 (Clockwise)

Preceding gene: 17545873

Following gene: 17545875

Centisome position: 32.64

GC content: 69.52

Gene sequence:

>1890_bases
GTGCACGGAGACCTTGGAATGAGCAAGCTCAGCTTCCGCCAGAAGCTTTGGCTGCCGCTGGCGTTCAGCCTGATCGCGCT
GACGCTGATGTCGGTGTTCAATGCCTATCAGGCGCGCGGGATTCGCATCGAGGAACGCAGGAACAACCTGGTCAGCGTGA
CCAGCATGGCGCTCAACCTGGTCAAGCAGTACGACGACCTGGCCCGCGGCGGCGTCCTGACCAAGGAGGCGGCACAGCAG
CAGGCGCTGGACCGCTTCCGCTCGCTGCGCTACGACAAGGACGGCTACTTCACCATCACCCGTTCCGACAACGTGGTGGT
GATGCACCCGATCAAGCCCGAATTCATCGGCAAGGACCAGACCGGCTTCAAGGACGCGCAGGGCAACAGCGTCTACGTCA
ATCTCACCAGCGCCGCCAGGCAGCCCAACGGCGGCTTCACCAGCTATGTCTGGCCGCACGTCGGTGGGACGGCGCTGGTG
CCGAAGACGGCCTTCGCGCAGCGCTACGAGCCGTGGGACTGGGTGTTTTCGACCGGCGCCTACATGGATGACATCAACGC
CGCGTTCATGACGTCGCTGTACGAGAGCGGCGGCCTGCTGCTGCTGGCGGGCGCGGTGCTGGTGTTGCTGGCCGGCGTGG
CCAACCGGGGTCTGCAGCGTGCGCTGGGCGGCGACCCGGCCTATGCGGCGGAGGTGGCCAACCGCATCGCCGGCGGCGAC
CTGAGCGTCGAGATTGCCACCCGGCCGGATGACCGCGACAGCCTGCTCTACGCCATGGGCCGCATGCGCGGCGCGCTGGT
GCAGACCATCGGCCGCATCAGGGGCGCATCGGAGACCATCGGCACGGCCACGCGCGAGATCGCCAGCGGAAACCTGGATC
TGTCTTCGCGTACCGAGCAGCAGGCGAGCTCGCTCGAAGAGACCGCCTCGGCCATGGAAGAGCTGATGTCGACCGTGCAG
CAGAACGCCGACAACGCCAACCAGGCCAACCAGCTGGCCGTGTCCGCCTCCGACGTGGCGGTGCGGGGCGGCGACGTGGT
GTCCCGCGTGGTCGAGACGATGGGCTCGATCAATGCGTCCTCGCGCAAGATCGTCGACATCATCGGCGTGATCGACGGGA
TCGCTTTCCAGACCAACATCCTGGCGCTCAATGCCGCCGTGGAAGCGGCGCGCGCGGGCGAGCAGGGGCGCGGCTTCGCG
GTGGTGGCCGGCGAGGTGCGCAGCCTGGCGCAGCGCAGCGCCGCCGCGGCCAAGGAGATCAAGGCGCTGATCGACGACTC
CGTGACCAACGTGGATGCCGGCAGCGCCCTGGTGGAAGAAGCCGGCACGACCATGCGCGAGATCGTCGCCAGCGTCCGGC
GCGTGACGGACATCGTCGGCGAGATCACCGCCGCGAGCCAGGAGCAGCGCTCGGGCATTGAAGAAGTCAGCCACGCTGTC
ACGCAGCTCGACGATGCCACCCAGCAGAATGCCGCGCTGGTGGAGCAGGCAGCGGCCGCCGCGCAATCGTTGCAGGAGCA
GGCCGACAGCCTGACGCAGGTCGTGGCGCAGTTCCGCCTCGACCCCACGATGTCGGCGGTGCGCAGCGTGGTGGCCAAGG
CCGAGCCGACGATCGCGCCGCCGGTGCCCAAGGCTGCCGAGGCCGGGCCGGCCACACCCGTACCCGTGGCCGCACCCGTG
GCCGCGCCGGCCCAGGCGCCGCGCCGCGAGCCGGTCAAGCCCAGCCCCGAGGCCGCGAGGCCCAAGCTGCAGCCGCGCAA
GGCGCCGGTGCTTGCCAAGCGCGCGGCCAGGCCGGATACCGCGCCCGCCACGGTGCCGGCCGCATCGCCCAAGCCTCTGC
ACCAGCCGCTGGTGGCCGCCGGCGACGATGCCGACTGGGAAACCTTCTGA

Upstream 100 bases:

>100_bases
GACGGGGGCGACTCAAGGTCTGCGCGCAAGTTGCCGATAGACAGTCCGTAGCCCTGAAAAAACATGGGGGGACGCCTCGT
GCACGGCACGGGGCGTTTCC

Downstream 100 bases:

>100_bases
ACCGTCCGGCGCGGCAACGCGCCGGCCTGACCCCGGCCCCGCACCTGGAATGCGGGCCGGTCTCCGGAGACAACTGTGGA
ACGCTTCCTGAAAAACACCA

Product: methyl-accepting chemotaxis transducer transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 629; Mature: 629

Protein sequence:

>629_residues
MHGDLGMSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNLVKQYDDLARGGVLTKEAAQQ
QALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDAQGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALV
PKTAFAQRYEPWDWVFSTGAYMDDINAAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGD
LSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQ
QNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA
VVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAV
TQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAPPVPKAAEAGPATPVPVAAPV
AAPAQAPRREPVKPSPEAARPKLQPRKAPVLAKRAARPDTAPATVPAASPKPLHQPLVAAGDDADWETF

Sequences:

>Translated_629_residues
MHGDLGMSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNLVKQYDDLARGGVLTKEAAQQ
QALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDAQGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALV
PKTAFAQRYEPWDWVFSTGAYMDDINAAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGD
LSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQ
QNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA
VVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAV
TQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAPPVPKAAEAGPATPVPVAAPV
AAPAQAPRREPVKPSPEAARPKLQPRKAPVLAKRAARPDTAPATVPAASPKPLHQPLVAAGDDADWETF
>Mature_629_residues
MHGDLGMSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNLVKQYDDLARGGVLTKEAAQQ
QALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDAQGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALV
PKTAFAQRYEPWDWVFSTGAYMDDINAAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGD
LSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQ
QNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA
VVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAV
TQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAPPVPKAAEAGPATPVPVAAPV
AAPAQAPRREPVKPSPEAARPKLQPRKAPVLAKRAARPDTAPATVPAASPKPLHQPLVAAGDDADWETF

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=322, Percent_Identity=59.9378881987578, Blast_Score=310, Evalue=2e-85,
Organism=Escherichia coli, GI2367378, Length=364, Percent_Identity=53.8461538461538, Blast_Score=306, Evalue=3e-84,
Organism=Escherichia coli, GI1788194, Length=309, Percent_Identity=55.663430420712, Blast_Score=288, Evalue=1e-78,
Organism=Escherichia coli, GI1787690, Length=330, Percent_Identity=52.1212121212121, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI1789453, Length=287, Percent_Identity=40.7665505226481, Blast_Score=200, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 66543; Mature: 66543

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGDLGMSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCHHHHHHHHHHH
VKQYDDLARGGVLTKEAAQQQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQ
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCHHHCCCCC
TGFKDAQGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGA
CCCCCCCCCEEEEEEHHHCCCCCCCCCCEECCCCCCCEECCCHHHHHCCCCHHHHHCCCC
YMDDINAAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGD
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
LSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQ
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
QASSLEETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINAS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEECCCCEECCHHHHHHHHHHHHCCCCC
SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
KALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAV
HHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
PVPKAAEAGPATPVPVAAPVAAPAQAPRREPVKPSPEAARPKLQPRKAPVLAKRAARPDT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
APATVPAASPKPLHQPLVAAGDDADWETF
CCCCCCCCCCCCCCCCHHCCCCCCCCCCC
>Mature Secondary Structure
MHGDLGMSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCHHHHHHHHHHH
VKQYDDLARGGVLTKEAAQQQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQ
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCHHHCCCCC
TGFKDAQGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGA
CCCCCCCCCEEEEEEHHHCCCCCCCCCCEECCCCCCCEECCCHHHHHCCCCHHHHHCCCC
YMDDINAAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGD
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
LSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQ
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
QASSLEETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINAS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEECCCCEECCHHHHHHHHHHHHCCCCC
SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
KALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAV
HHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
PVPKAAEAGPATPVPVAAPVAAPAQAPRREPVKPSPEAARPKLQPRKAPVLAKRAARPDT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
APATVPAASPKPLHQPLVAAGDDADWETF
CCCCCCCCCCCCCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]