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The map label for this gene is ywhC [H]

Identifier: 17545861

GI number: 17545861

Start: 1198159

End: 1198836

Strand: Direct

Name: ywhC [H]

Synonym: RSc1142

Alternate gene names: 17545861

Gene position: 1198159-1198836 (Clockwise)

Preceding gene: 17545860

Following gene: 17545862

Centisome position: 32.24

GC content: 67.99

Gene sequence:

>678_bases
ATGAATCCCACCGTCATCCAAACTCTCACGGTCTACGCGATCCCCGTGCTGTTCGCGATCACCGTGCCGGCCGCCGCCCG
TGGCTATCTCGCCAGGCACTATGGAGACAACACGGCGTTCCTGGCGGGCCGGCTGAGTTTCAACCCGCTGCGCCATGTCG
ATCCGATCGGTACGATCGCGATGCCGCTGCTGCTGTACTTCGTGACGGGGGGCGCGCTCGTATTCGGCTATTCCAAGCCG
GTGCCGGTGGATTTCAGCGCGCTGCGCGATCCGCGCTGGCAGGGGCTGCGCGTGGCGCTGGCCGCGCCGGAGACCAATTT
CGCGATGGCGCTGGCCTGGGGGATGCTCGGGCTCACCCTGGCCGCTGCCGGCATCGACGAGCGCTTCCTGACGGGCATGG
CGGCCGCCGGCGTCGGCGCCAATCTCGCCATGGTCGCGCTCAATCTCGTCCCGGTGCCGCCGCTGGATGGCGGCCGGGTG
CTGGCGGCGCTGCTGCCGCAGCGCCTGGCGCCGGTCTTCGCCCGTGTCGAGCAATATGGTTTCTACATCGTCATGGCGCT
GATCCTGACGGGCGTGCTGACCCAGGTCTGGATGCGCCCGGTCGCGGGGTTGCTGGCCAAGGCGCTGATGATGGTCCTCA
GTCCGCTTCAGGCGGCGCTTTCCTGGTTCGTCTCCTAA

Upstream 100 bases:

>100_bases
GGTGCGCAGGGGGCGCGGCGACCCGGCCAGGGTCGGCCTGTAGGCAAGGCGCGCGGGCGGCCGCTGTGCGGTTGCGCGCG
CTTGCTACAATAGCCCGCTT

Downstream 100 bases:

>100_bases
ATCCTTTCCCCACATGTTTCCTGAACGCGTTCTTTCCGGCATGCGGCCGACCGGTGCCTTGCACCTGGGTCACTACCACG
GCGTCCTGAAAAACTGGGTC

Product: integral membrane transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNPTVIQTLTVYAIPVLFAITVPAAARGYLARHYGDNTAFLAGRLSFNPLRHVDPIGTIAMPLLLYFVTGGALVFGYSKP
VPVDFSALRDPRWQGLRVALAAPETNFAMALAWGMLGLTLAAAGIDERFLTGMAAAGVGANLAMVALNLVPVPPLDGGRV
LAALLPQRLAPVFARVEQYGFYIVMALILTGVLTQVWMRPVAGLLAKALMMVLSPLQAALSWFVS

Sequences:

>Translated_225_residues
MNPTVIQTLTVYAIPVLFAITVPAAARGYLARHYGDNTAFLAGRLSFNPLRHVDPIGTIAMPLLLYFVTGGALVFGYSKP
VPVDFSALRDPRWQGLRVALAAPETNFAMALAWGMLGLTLAAAGIDERFLTGMAAAGVGANLAMVALNLVPVPPLDGGRV
LAALLPQRLAPVFARVEQYGFYIVMALILTGVLTQVWMRPVAGLLAKALMMVLSPLQAALSWFVS
>Mature_225_residues
MNPTVIQTLTVYAIPVLFAITVPAAARGYLARHYGDNTAFLAGRLSFNPLRHVDPIGTIAMPLLLYFVTGGALVFGYSKP
VPVDFSALRDPRWQGLRVALAAPETNFAMALAWGMLGLTLAAAGIDERFLTGMAAAGVGANLAMVALNLVPVPPLDGGRV
LAALLPQRLAPVFARVEQYGFYIVMALILTGVLTQVWMRPVAGLLAKALMMVLSPLQAALSWFVS

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23948; Mature: 23948

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTVIQTLTVYAIPVLFAITVPAAARGYLARHYGDNTAFLAGRLSFNPLRHVDPIGTIA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHH
MPLLLYFVTGGALVFGYSKPVPVDFSALRDPRWQGLRVALAAPETNFAMALAWGMLGLTL
HHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
AAAGIDERFLTGMAAAGVGANLAMVALNLVPVPPLDGGRVLAALLPQRLAPVFARVEQYG
HHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
FYIVMALILTGVLTQVWMRPVAGLLAKALMMVLSPLQAALSWFVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNPTVIQTLTVYAIPVLFAITVPAAARGYLARHYGDNTAFLAGRLSFNPLRHVDPIGTIA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHH
MPLLLYFVTGGALVFGYSKPVPVDFSALRDPRWQGLRVALAAPETNFAMALAWGMLGLTL
HHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
AAAGIDERFLTGMAAAGVGANLAMVALNLVPVPPLDGGRVLAALLPQRLAPVFARVEQYG
HHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
FYIVMALILTGVLTQVWMRPVAGLLAKALMMVLSPLQAALSWFVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]