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The map label for this gene is yciO [H]

Identifier: 17545860

GI number: 17545860

Start: 1197478

End: 1198101

Strand: Direct

Name: yciO [H]

Synonym: RSc1141

Alternate gene names: 17545860

Gene position: 1197478-1198101 (Clockwise)

Preceding gene: 17545859

Following gene: 17545861

Centisome position: 32.22

GC content: 72.28

Gene sequence:

>624_bases
ATGTCCCAGTTCTTCCAGATCCATCCGACCACGCCGCAGGGGCGGCTGATCCGCCAGGCGGTGGAAATCATCCGCGCCGG
CGGCCTGATCGCGCTGCCGACCGACTCCTGCTACGCGCTGGCCTGCCACCTGGATGACAAGGCCGCCGTGGAGCGCTTGC
GCCGCGTGCGCGGCATCGACGAAAAGCACCACCTGACGCTGATGTGCCGGGACCTGTCGGAGCTGGCCACCTTCGCCCGC
GTCGACAACCGGCAGTATCGCGCGGTCAAGGCGGCCACGCCCGGCCCGTTCGTCTTCCTGCTGGAGGCGACCCGGGAGGT
GCCGCGCCGGCTGTCGCATCCGTCGCGCAAGACCATCGGCCTGCGCGTGCCCGACCACCCGATCCCGCTGGCGCTGATGG
CCGAGCTGGGCGAGCCGCTGCTGTCCGCCACGCTGCAGCTGCCGGGCGACGAAGCGCCGCTCAACGAAGCGGATGCCATC
CGCGCCCTGCTGGAGCGGCAACTGGAGCTGGTGATCGACGGCGGCCCGGCCCCGGCAGAGCCCACCACCGTGATCGACCT
GACCGGCGGCGAGCCGGAACTGGTGCGCAGGGGGCGCGGCGACCCGGCCAGGGTCGGCCTGTAG

Upstream 100 bases:

>100_bases
GAGGGCCGGGTCGAGCTGGGCGAGCTGCCGCCGCTGCCGGACAACCTGACGCCGGTGTGGAGCCGGTGGCTGTCCTGAGC
CCGCAGCCCGCCGGCCGCGC

Downstream 100 bases:

>100_bases
GCAAGGCGCGCGGGCGGCCGCTGTGCGGTTGCGCGCGCTTGCTACAATAGCCCGCTTATGAATCCCACCGTCATCCAAAC
TCTCACGGTCTACGCGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSQFFQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHHLTLMCRDLSELATFAR
VDNRQYRAVKAATPGPFVFLLEATREVPRRLSHPSRKTIGLRVPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAI
RALLERQLELVIDGGPAPAEPTTVIDLTGGEPELVRRGRGDPARVGL

Sequences:

>Translated_207_residues
MSQFFQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHHLTLMCRDLSELATFAR
VDNRQYRAVKAATPGPFVFLLEATREVPRRLSHPSRKTIGLRVPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAI
RALLERQLELVIDGGPAPAEPTTVIDLTGGEPELVRRGRGDPARVGL
>Mature_206_residues
SQFFQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHHLTLMCRDLSELATFARV
DNRQYRAVKAATPGPFVFLLEATREVPRRLSHPSRKTIGLRVPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIR
ALLERQLELVIDGGPAPAEPTTVIDLTGGEPELVRRGRGDPARVGL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=201, Percent_Identity=55.2238805970149, Blast_Score=230, Evalue=5e-62,
Organism=Escherichia coli, GI2367210, Length=186, Percent_Identity=27.4193548387097, Blast_Score=63, Evalue=1e-11,
Organism=Drosophila melanogaster, GI78707274, Length=185, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22689; Mature: 22557

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGID
CCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHCCC
EKHHLTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATREVPRRLSHPSRKTIG
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCCEEE
LRVPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGGPAPAE
EECCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCC
PTTVIDLTGGEPELVRRGRGDPARVGL
CCEEEEECCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SQFFQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGID
CCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHCCC
EKHHLTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATREVPRRLSHPSRKTIG
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCCEEE
LRVPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGGPAPAE
EECCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCC
PTTVIDLTGGEPELVRRGRGDPARVGL
CCEEEEECCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]